嗜盐碱嗜环菌W13P3菌株的基因组草图序列，一种耐盐多环芳烃降解细菌。
Draft Genome Sequence of Ochrobactrum anthropi Strain W13P3, a Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Bacterium.
作者信息
Wang Xinxin, Jin Decai, Zhou Lisha, Zhang Zhuo
机构信息
School of Environmental Science and Engineering, Tianjin University, Tianjin, China China Offshore Environmental Service Co. Ltd., Tianjin, China
Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.
出版信息
Genome Announc. 2015 Jul 30;3(4):e00867-15. doi: 10.1128/genomeA.00867-15.
Abstract
Ochrobactrum anthropi W13P3 was isolated from saline soil contaminated by polycyclic aromatic hydrocarbons (PAHs) and could degrade PAHs with 5% NaCl. We report the 5.3-Mb draft genome sequence of this strain, which is helpful for understanding the diversity of Ochrobactrum spp. and the mechanism of PAH degradation in saline environments.
摘要
嗜人苍白杆菌W13P3是从受多环芳烃（PAHs）污染的盐渍土壤中分离得到的，并且能够在5%氯化钠存在的情况下降解多环芳烃。我们报道了该菌株5.3 Mb的基因组草图序列，这有助于了解苍白杆菌属的多样性以及盐渍环境中多环芳烃的降解机制。
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2
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3
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4
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
5
Toward almost closed genomes with GapFiller.
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
6
NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.
PLoS One. 2012;7(2):e30619. doi: 10.1371/journal.pone.0030619. Epub 2012 Feb 1.
7
SignalP 4.0: discriminating signal peptides from transmembrane regions.
Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.
8
Genome of Ochrobactrum anthropi ATCC 49188 T, a versatile opportunistic pathogen and symbiont of several eukaryotic hosts.
J Bacteriol. 2011 Aug;193(16):4274-5. doi: 10.1128/JB.05335-11. Epub 2011 Jun 17.
9
PHAST: a fast phage search tool.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
10
Scaffolding pre-assembled contigs using SSPACE.
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
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