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与游离的和有机磷共轭的乙酰胆碱酯酶活性位点峡谷结合的Ortho-7:阳离子-π相互作用

Ortho-7 bound to the active-site gorge of free and OP-conjugated acetylcholinesterase: cation-π interactions.

作者信息

Pathak Arup Kumar, Bandyopadhyay Tusar

机构信息

Theoretical Chemistry Section, Bhabha Atomic Research Centre, Mumbai, 400085, India.

出版信息

Biopolymers. 2016 Jan;105(1):10-20. doi: 10.1002/bip.22712.

Abstract

Despite the immense importance of cation-π interactions prevailing in bispyridinium drug acetylcholinesterase (AChE) complexes, a precise description of cation-π interactions at molecular level has remained elusive. Here, we consider a bispyridinium drug, namely, ortho-7 in three different structures of AChE, with and without complexation with organophosphorus (OP) compounds for detailed investigation using all atom molecular dynamics simulation. By quantum mechanical calculations, Y72, W86, Y124, W286, Y337, and Y341 aromatic residues of the enzyme are investigated for possible cation-π interactions with ortho-7. The cation-π interactions in each of the protein-drug complexes are studied using distance, angle, a suitable functional form of them, and electrostatic criteria. The variation of cation-π functional is remarkably consistent with that of the Columbic variation. It is clearly observed that cation-π interactions for some of the residues in the catalytic active site (CAS) and peripheral anionic site (PAS) of the enzyme are either enhanced or reduced based on the nature of OP conjugation (i.e., nerve gas, tabun or pesticide, fenamiphos) when compared with the OP-free enzyme. The strength of cation-π interaction is strongly dependent on the type OP conjugation. The effect of conjugation at CAS is also seen to influence the cation-π interaction at the PAS region. The variation of cation-π interactions on the type of conjugating OP compounds might be suggestive of a reason as to why wide spectrum drug against any OP poisoning is yet to arrive in the market.

摘要

尽管双吡啶鎓类药物与乙酰胆碱酯酶(AChE)复合物中普遍存在的阳离子-π相互作用极为重要,但在分子水平上对其进行精确描述仍难以实现。在此,我们考虑一种双吡啶鎓类药物,即邻位-7,它存在于AChE的三种不同结构中,分别研究其与有机磷(OP)化合物络合及未络合的情况,通过全原子分子动力学模拟进行详细探究。通过量子力学计算,研究了该酶的Y72、W86、Y124、W286、Y337和Y341芳香族残基与邻位-7之间可能存在的阳离子-π相互作用。利用距离、角度、它们的合适函数形式以及静电标准,对每种蛋白质-药物复合物中的阳离子-π相互作用进行了研究。阳离子-π函数的变化与库仑变化显著一致。可以清楚地观察到,与无OP的酶相比,基于OP共轭的性质(即神经毒气塔崩或农药苯线磷),酶的催化活性位点(CAS)和外周阴离子位点(PAS)中某些残基的阳离子-π相互作用要么增强,要么减弱。阳离子-π相互作用的强度强烈依赖于OP共轭的类型。还发现CAS处的共轭作用会影响PAS区域的阳离子-π相互作用。阳离子-π相互作用随共轭OP化合物类型的变化,可能暗示了为何针对任何OP中毒的广谱药物尚未上市的原因。

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