Computation and Simulation Unit (Analytical Discipline and Centralized Instrument Facility), CSIR-Central Salt and Marine Chemicals Research Institute, Bhavnagar, Gujarat, 364 002, India.
Academy of Scientific and Innovative Research, CSIR-CSMCRI, Bhavnagar, Gujarat, 364 002, India.
J Comput Aided Mol Des. 2018 Jul;32(7):793-807. doi: 10.1007/s10822-018-0130-1. Epub 2018 Jul 6.
The neutral oxime reactivator RS194B with a seven-membered ring has shown better efficacy towards the tabun-inhibited AChE than that of RS69N with a six-membered ring and RS41A with a five-membered ring. The difference in the efficacy of these reactivators has remained unexplored. We report here the origin of the difference of efficacy of these reactivators based on the conformational analysis, quantum chemical calculations and steered molecular dynamics (SMD) simulations. The conformational analysis using B3LYP/6-31G(d) level of theory revealed that RS41A and RS194B are more stable in gauche conformation due to the gauche effect (-N-C-C-N- bonds) whereas RS69N prefers anti-conformation. The SMD simulations show that RS194B retains in more stable gauche conformation inside the active gorge of AChE during different time intervals that experiences more hydrogen bonding, hydrophobic interactions with the catalytic anionic site (CAS) residues and weaker interactions with the peripheral anionic site (PAS) residues compared to RS41A and RS69N. In an effort to design an even superior reactivator, RS194B-S has been chosen with a subtle change in the geometry of RS194B by replacing the carbonyl oxygen with the sulfur atom. The newly designed reactivator RS194B-S can also be a promising candidate to reactivate tabun-inhibited AChE.
具有七元环的中性肟重活化剂 RS194B 对塔崩抑制的 AChE 的疗效优于具有六元环的 RS69N 和五元环的 RS41A。这些重活化剂疗效的差异尚未得到探索。我们在此基于构象分析、量子化学计算和导向分子动力学(SMD)模拟,报道了这些重活化剂疗效差异的起源。使用 B3LYP/6-31G(d)理论水平的构象分析表明,RS41A 和 RS194B 由于 gauche 效应(-N-C-C-N-键)更稳定,呈 gauche 构象,而 RS69N 则更喜欢反式构象。SMD 模拟表明,与 RS41A 和 RS69N 相比,RS194B 在 AChE 活性峡谷内保留了更稳定的 gauche 构象,在不同的时间间隔内经历了更多的氢键、与催化阴离子部位(CAS)残基的疏水相互作用以及与外周阴离子部位(PAS)残基的较弱相互作用。为了设计更优越的重活化剂,通过用硫原子取代 RS194B 的羰基氧,对 RS194B 的几何形状进行了细微的改变,选择了 RS194B-S。新设计的重活化剂 RS194B-S 也可能是重激活塔崩抑制的 AChE 的有前途的候选物。