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水合转运核糖核酸(tRNA)类对数弛豫动力学的温度依赖性

Temperature Dependence of Logarithmic-like Relaxational Dynamics of Hydrated tRNA.

作者信息

Chu Xiang-Qiang, Mamontov Eugene, O'Neill Hugh, Zhang Qiu

机构信息

†Department of Physics and Astronomy, Wayne State University, Detroit, Michigan 48201, United States.

‡Biology and Soft Matter Division, Neutron Sciences Directorate, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States.

出版信息

J Phys Chem Lett. 2013 Mar 21;4(6):936-42. doi: 10.1021/jz400128u. Epub 2013 Mar 7.

Abstract

The dynamics of RNA within the β-relaxation region of 10 ps to 1 ns is crucial to its biological function. Because of its simpler chemical building blocks and the lack of the side methyl groups, faster relaxational dynamics of RNA compared to proteins can be expected. However, the situation is actually opposite. In this work, the relaxational dynamics of tRNA is measured by quasielastic neutron scattering and analyzed using the mode coupling theory, originally developed for glass-forming liquids. Our results reveal that the dynamics of tRNA follows a log-decay within the β-relaxation region, which is an important trait demonstrated by the dynamics of proteins. The dynamics of hydrated tRNA and lysozyme compared in the time domain further demonstrate that the slower dynamics of tRNA relative to proteins originates from the difference in the folded states of tRNA and proteins, as well as the influence of their hydration water.

摘要

RNA在10皮秒至1纳秒的β弛豫区域内的动力学对其生物学功能至关重要。由于其化学构建单元更简单且缺乏侧甲基,与蛋白质相比,RNA有望具有更快的弛豫动力学。然而,实际情况却相反。在这项工作中,通过准弹性中子散射测量了tRNA的弛豫动力学,并使用最初为玻璃形成液体开发的模式耦合理论进行了分析。我们的结果表明,tRNA的动力学在β弛豫区域内遵循对数衰减,这是蛋白质动力学所表现出的一个重要特征。在时域中对水合tRNA和溶菌酶的动力学进行比较进一步表明,tRNA相对于蛋白质较慢的动力学源于tRNA和蛋白质折叠状态的差异以及它们水化水的影响。

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