Nicolay Brandon N, Danielian Paul S, Kottakis Filippos, Lapek John D, Sanidas Ioannis, Miles Wayne O, Dehnad Mantre, Tschöp Katrin, Gierut Jessica J, Manning Amity L, Morris Robert, Haigis Kevin, Bardeesy Nabeel, Lees Jacqueline A, Haas Wilhelm, Dyson Nicholas J
Massachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, Massachusetts 02129, USA;
David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
Genes Dev. 2015 Sep 1;29(17):1875-89. doi: 10.1101/gad.264127.115. Epub 2015 Aug 27.
The retinoblastoma tumor suppressor (pRb) protein associates with chromatin and regulates gene expression. Numerous studies have identified Rb-dependent RNA signatures, but the proteomic effects of Rb loss are largely unexplored. We acutely ablated Rb in adult mice and conducted a quantitative analysis of RNA and proteomic changes in the colon and lungs, where Rb(KO) was sufficient or insufficient to induce ectopic proliferation, respectively. As expected, Rb(KO) caused similar increases in classic pRb/E2F-regulated transcripts in both tissues, but, unexpectedly, their protein products increased only in the colon, consistent with its increased proliferative index. Thus, these protein changes induced by Rb loss are coupled with proliferation but uncoupled from transcription. The proteomic changes in common between Rb(KO) tissues showed a striking decrease in proteins with mitochondrial functions. Accordingly, RB1 inactivation in human cells decreased both mitochondrial mass and oxidative phosphorylation (OXPHOS) function. RB(KO) cells showed decreased mitochondrial respiratory capacity and the accumulation of hypopolarized mitochondria. Additionally, RB/Rb loss altered mitochondrial pyruvate oxidation from (13)C-glucose through the TCA cycle in mouse tissues and cultured cells. Consequently, RB(KO) cells have an enhanced sensitivity to mitochondrial stress conditions. In summary, proteomic analyses provide a new perspective on Rb/RB1 mutation, highlighting the importance of pRb for mitochondrial function and suggesting vulnerabilities for treatment.
视网膜母细胞瘤肿瘤抑制蛋白(pRb)与染色质结合并调节基因表达。众多研究已确定了Rb依赖性RNA特征,但Rb缺失对蛋白质组的影响在很大程度上尚未得到探索。我们在成年小鼠中急性敲除Rb,并对结肠和肺中的RNA及蛋白质组变化进行了定量分析,在这两个组织中,Rb基因敲除(Rb(KO))分别足以或不足以诱导异位增殖。正如预期的那样,Rb(KO)在两个组织中均导致经典pRb/E2F调控转录本出现类似增加,但出乎意料的是,其蛋白质产物仅在结肠中增加,这与其增加的增殖指数一致。因此,由Rb缺失诱导的这些蛋白质变化与增殖相关,但与转录无关。Rb(KO)组织之间共有的蛋白质组变化显示,具有线粒体功能的蛋白质显著减少。相应地,人类细胞中RB1失活会降低线粒体质量和氧化磷酸化(OXPHOS)功能。RB(KO)细胞显示出线粒体呼吸能力下降以及低极化线粒体的积累。此外,RB/Rb缺失改变了小鼠组织和培养细胞中通过三羧酸循环由(13)C - 葡萄糖进行的线粒体丙酮酸氧化。因此,RB(KO)细胞对线粒体应激条件具有更高的敏感性。总之,蛋白质组分析为Rb/RB1突变提供了新的视角,突出了pRb对线粒体功能的重要性,并提示了治疗的潜在靶点。