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两种新型硫代磷酸三酰胺结构的 Hirshfeld 表面分析

Hirshfeld surface analysis of two new phosphorothioic triamide structures.

作者信息

Alamdar Amir Hossein, Pourayoubi Mehrdad, Saneei Anahid, Dušek Michal, Kučeráková Monika, Henriques Margarida S

机构信息

Department of Chemistry, Faculty of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran.

Institute of Physics, Czech Academy of Sciences v.v.i., Na Slovance 2, 182 21 Prague 8, Czech Republic.

出版信息

Acta Crystallogr C Struct Chem. 2015 Sep;71(Pt 9):824-33. doi: 10.1107/S2053229615014527. Epub 2015 Aug 27.

Abstract

Hirshfeld surfaces and two-dimensional fingerprint plots are used to analyse the intermolecular interactions in two new phosphorothioic triamide structures, namely N,N',N''-tris(3,4-dimethylphenyl)phosphorothioic triamide acetonitrile hemisolvate, P(S)[NHC6H3-3,4-(CH3)2]3·0.5CH3CN or C24H30N3PS·0.5CH3CN, (I), and N,N',N''-tris(4-methylphenyl)phosphorothioic triamide-3-methylpiperidinium chloride (1/1), P(S)[NHC6H4(4-CH3)]3·3-CH3-C5H9NH2·Cl(-) or C21H24N3PS·C6H14N(+)·Cl(-), (II). The asymmetric unit of (I) consists of two independent phosphorothioic triamide molecules and one acetonitrile solvent molecule, whereas for (II), the asymmetric unit is composed of three components (molecule, cation and anion). In the structure of (I), the different components are organized into a six-molecule aggregate through N-H···S and N-H···N hydrogen bonds. The components of (II) are aggregated into a two-dimensional array through N-H···S and N-H···Cl hydrogen bonds. Moreover, interesting features of packing arise in this structure due to the presence of a double hydrogen-bond acceptor (the S atom of the phosphorothioic triamide molecule) and of a double hydrogen-bond donor (the N-H unit of the cation). For both (I) and (II), the full fingerprint plot of each component is asymmetric as a consequence of the presence of three fragments. These analyses reveal that H···H interactions [67.7 and 64.3% for the two symmetry-independent phosphorothioic triamide molecules of (I), 30.7% for the acetonitrile solvent of (I), 63.8% in the phosphorothioic triamide molecule of (II) and 62.9% in the 3-methylpiperidinium cation of (II)] outnumber the other contacts for all the components in both structures, except for the chloride anion of (II), which only receives the Cl···H contact. The phosphorothioic triamide molecules of both structures include unsaturated C atoms, thus presenting C···H/H···C interactions: 17.6 and 21% for the two symmetry-independent phosphorothioic triamide molecules in (I), and 22.7% for the phosphorothioic triamide molecule of (II). Furthermore, the N-H···S hydrogen bonds in both (I) and (II), and the N-H...Cl hydrogen bonds in (II), are the most prominent interactions, appearing as large red spots on the Hirshfeld surface maps. The N···H/H···N contacts in structure (I) are considerable, whereas for (II), they give a negligible contribution to the total interactions in the system.

摘要

利用 Hirshfeld 表面和二维指纹图谱分析了两种新型硫代磷酰胺结构中的分子间相互作用,即 N,N',N''-三(3,4-二甲基苯基)硫代磷酰胺乙腈半溶剂化物,P(S)[NHC6H3-3,4-(CH3)2]3·0.5CH3CN 或 C24H30N3PS·0.5CH3CN,(I),以及 N,N',N''-三(4-甲基苯基)硫代磷酰胺-3-甲基哌啶鎓氯化物(1/1),P(S)[NHC6H4(4-CH3)]3·3-CH3-C5H9NH2·Cl(-) 或 C21H24N3PS·C6H14N(+)·Cl(-),(II)。(I)的不对称单元由两个独立的硫代磷酰胺分子和一个乙腈溶剂分子组成,而对于(II),不对称单元由三个组分(分子、阳离子和阴离子)组成。在(I)的结构中,不同的组分通过 N-H···S 和 N-H···N 氢键形成一个六分子聚集体。(II)的组分通过 N-H···S 和 N-H···Cl 氢键聚集形成二维阵列。此外,由于存在双氢键受体(硫代磷酰胺分子的 S 原子)和双氢键供体(阳离子的 N-H 单元),该结构中出现了有趣的堆积特征。对于(I)和(II),由于存在三个片段,每个组分的完整指纹图谱都是不对称的。这些分析表明,H···H 相互作用[(I)中两个对称独立的硫代磷酰胺分子分别为 67.7%和 64.3%,(I)的乙腈溶剂为 30.7%,(II)的硫代磷酰胺分子为 63.8%,(II)的 3-甲基哌啶鎓阳离子为 62.9%]在两种结构中所有组分的其他接触中占比最大,但(II)的氯离子除外,它只接受 Cl···H 接触。两种结构的硫代磷酰胺分子都包含不饱和 C 原子,因此存在 C···H/H···C 相互作用:(I)中两个对称独立的硫代磷酰胺分子分别为 17.6%和 21%,(II)的硫代磷酰胺分子为 22.7%。此外,(I)和(II)中的 N-H···S 氢键以及(II)中的 N-H...Cl 氢键是最显著的相互作用,在 Hirshfeld 表面图上表现为大的红色斑点。结构(I)中的 N···H/H···N 接触相当可观,而对于(II),它们对系统中的总相互作用贡献可忽略不计。

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