Bo Zhang, Wenping Song, Kefeng Liu, Debin Zheng, Chao Ma, Guangxia Xiao
a Tianjin Bohai Sea Fisheries Research Institute, Bohai Sea Fisheries Research Center of Chinese Academy of Fishery Sciences , Tianjin , China.
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3663-5. doi: 10.3109/19401736.2015.1079845. Epub 2015 Sep 2.
The complete mitochondrial genome of Stewartia sinensis was obtained with long PCR approach. Amplification primers were designed according to mitogenome sequences of some other fish species. PCR reactions were according to Kong et al. ( 2009 ). The complete mitochondria sequence of Cleithenes herzenstein was deposited in GenBank under the accession number KT223828. Structural and evolutionary analyses were also performed. The length of the complete mitochondrial DNA sequence was 17 175 bp, consisting of 13 protein-coding genes, 22 tRNA genes, and two rRNA genes. Other than D-loop, another non-coding region named ''OL'' region was found ( Table 1 ). The ''OL'' region (CTTTTTCCCGCCTAGTTTAACCAGTAAAAGGCGGGAA) is 38 bp and has the potential to fold into a stem-loop secondary structure. Most of the genes were encoded on the heavy strand (H strand) except for ND6 and eight tRNA genes ( Table 1 ). The base composition and gene arrangement of C. herzenstein mitogenome was identical to typical vertebrate. For sequence alignment, the mitogenome sequence of C. herzenstein was 96% and 95% similar to that of Platichthys stellatus and Verasper moseri, respectively.
采用长PCR方法获得了中华猕猴桃的完整线粒体基因组。根据其他一些鱼类的有丝分裂基因组序列设计扩增引物。PCR反应按照Kong等人(2009年)的方法进行。赫氏斜颌鲴的完整线粒体序列已存入GenBank,登录号为KT223828。还进行了结构和进化分析。完整线粒体DNA序列的长度为17175bp,由13个蛋白质编码基因、22个tRNA基因和两个rRNA基因组成。除了D-loop外,还发现了另一个名为“OL”区域的非编码区(表1)。“OL”区域(CTTTTTCCCGCCTAGTTTAACCAGTAAAAGGCGGGAA)为38bp,有折叠成茎环二级结构的潜力。除了ND6和8个tRNA基因外,大多数基因都在重链(H链)上编码(表1)。赫氏斜颌鲴有丝分裂基因组的碱基组成和基因排列与典型脊椎动物相同。在序列比对中,赫氏斜颌鲴的有丝分裂基因组序列与星斑川鲽和条斑星鲽的序列分别有96%和95%的相似性。