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嗜热真细菌海栖热袍菌UDP-己糖4-表异构酶底物选择性的结构基础。

The structural basis of substrate promiscuity in UDP-hexose 4-epimerase from the hyperthermophilic Eubacterium Thermotoga maritima.

作者信息

Shin Sun-Mi, Choi Jin Myung, di Luccio Eric, Lee Yong-Jik, Lee Sang-Jae, Lee Sang Jun, Lee Sung Haeng, Lee Dong-Woo

机构信息

School of Applied Biosciences, Kyungpook National University, Daegu 702-701, South Korea.

Department of Cellular and Molecular Medicine, Chosun University School of Medicine, Gwangju 501-759, South Korea.

出版信息

Arch Biochem Biophys. 2015 Nov 1;585:39-51. doi: 10.1016/j.abb.2015.08.025. Epub 2015 Sep 3.

Abstract

UDP-galactose 4-epimerase (GalE) catalyzes the interconversion of UDP-glucose (UDP-Glc) and UDP-galactose (UDP-Gal), which is a pivotal step in the Leloir pathway for d-galactose metabolism. Although GalE is widely distributed in prokaryotes and eukaryotes, little information is available regarding hyperthermophilic GalE. We overexpressed the TM0509 gene, encoding a putative GalE from Thermotoga maritima (TMGalE), in Escherichia coli and characterized the encoded protein. To further investigate the molecular basis of this enzyme's catalytic function, we determined the crystal structures of TMGalE and TMGalE bound to UDP-Glc at resolutions of 1.9 Å and 2.0 Å, respectively. The enzyme was determined to be a homodimer with a molecular mass of 70 kDa. The enzyme could reversibly catalyze the epimerization of UDP-GalNAc/UDP-GlcNAc as well as UDP-Gal/UDP-Glc at elevated temperatures, with an apparent optimal temperature and pH of 80 °C and 7.0, respectively. Our data showed that TM0509 is a UDP-galactosugar 4-epimerase involved in d-galactose metabolism; consequently, this study provides the first detailed characterization of a hyperthermophilic GalE. Moreover, the promiscuous substrate specificity of TMGalE, which is more similar to human GalE than E. coli GalE, supports the notion that TMGalE might exhibit the earliest form of sugar-epimerizing enzymes in the evolution of galactose metabolism.

摘要

UDP-半乳糖4-差向异构酶(GalE)催化UDP-葡萄糖(UDP-Glc)和UDP-半乳糖(UDP-Gal)的相互转化,这是Leloir途径中D-半乳糖代谢的关键步骤。尽管GalE广泛分布于原核生物和真核生物中,但关于嗜热GalE的信息却很少。我们在大肠杆菌中过表达了编码来自嗜热栖热菌(TMGalE)的假定GalE的TM0509基因,并对编码的蛋白质进行了表征。为了进一步研究该酶催化功能的分子基础,我们分别以1.9 Å和2.0 Å的分辨率测定了与UDP-Glc结合的TMGalE和TMGalE的晶体结构。该酶被确定为分子量为70 kDa的同型二聚体。该酶能够在高温下可逆地催化UDP-GalNAc/UDP-GlcNAc以及UDP-Gal/UDP-Glc的差向异构化反应,其表观最适温度和pH分别为80°C和7.0。我们的数据表明,TM0509是一种参与D-半乳糖代谢的UDP-半乳糖糖4-差向异构酶;因此,本研究首次对嗜热GalE进行了详细表征。此外,TMGalE的混杂底物特异性比大肠杆菌GalE更类似于人类GalE,这支持了TMGalE可能在半乳糖代谢进化中表现出最早形式的糖差向异构酶的观点。

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