从一只阿拉斯加黑顶山雀（Poecile atricapillus）的胃肠道样本中分离出完整的环状病毒基因组序列。
Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample.
作者信息
Hanna Zachary R, Runckel Charles, Fuchs Jérôme, DeRisi Joseph L, Mindell David P, Van Hemert Caroline, Handel Colleen M, Dumbacher John P
机构信息
California Academy of Sciences, San Francisco, California, USA Department of Integrative Biology and Museum of Vertebrate Zoology, University of California Berkeley, Berkeley, California, USA
Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, USA Howard Hughes Medical Institute, Bethesda, Maryland, USA.
出版信息
Genome Announc. 2015 Sep 24;3(5):e01081-15. doi: 10.1128/genomeA.01081-15.
Abstract
We report here the genome sequence of a circular virus isolated from samples of an Alaskan black-capped chickadee (Poecile atricapillus) gastrointestinal tract. The genome is 2,152 bp in length and is most similar (30 to 44.5% amino acid identity) to the genome sequences of other single-stranded DNA (ssDNA) circular viruses belonging to the gemycircularvirus group.
摘要
我们在此报告从一只阿拉斯加黑顶山雀（Poecile atricapillus）胃肠道样本中分离出的一种环状病毒的基因组序列。该基因组长度为2152个碱基对，与属于环曲病毒组的其他单链DNA（ssDNA）环状病毒的基因组序列最为相似（氨基酸同一性为30%至44.5%）。
相似文献
1
Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample.从一只阿拉斯加黑顶山雀（Poecile atricapillus）的胃肠道样本中分离出完整的环状病毒基因组序列。
Genome Announc. 2015 Sep 24;3(5):e01081-15. doi: 10.1128/genomeA.01081-15.
2
Statistical classification of black-capped (Poecile atricapillus) and mountain chickadee (Poecile gambeli) call notes.黑头山雀（Poecile atricapillus）和北美黑顶山雀（Poecile gambeli）叫声的统计分类
J Comp Psychol. 2006 May;120(2):147-53. doi: 10.1037/0735-7036.120.2.147.
3
Blood Serum Chemistry of Wild Alaskan Black-capped Chickadees ( Poecile atricapillus ) with Avian Keratin Disorder.患有禽类角蛋白紊乱的阿拉斯加野生黑顶山雀（Poecile atricapillus）的血清化学分析
J Wildl Dis. 2016 Oct;52(4):927-930. doi: 10.7589/2016-02-034. Epub 2016 Jul 19.
4
Detection and molecular characterization of a reovirus in black-capped chickadees (Poecile atricapillus) from Minnesota, USA.美国明尼苏达州黑顶山雀（Poecile atricapillus）中呼肠孤病毒的检测与分子特征分析。
J Wildl Dis. 2014 Oct;50(4):928-32. doi: 10.7589/2014-02-045. Epub 2014 Aug 14.
5
An investigation of sex differences in acoustic features in black-capped chickadee (Poecile atricapillus) chick-a-dee calls.对黑头山雀（Poecile atricapillus）“chick-a-dee”叫声声学特征的性别差异研究。
J Acoust Soc Am. 2016 Sep;140(3):1598. doi: 10.1121/1.4962281.
6
Frequency sensitivity in the auditory periphery of male and female black-capped chickadees (Poecile atricapillus).雄性和雌性黑顶山雀（Poecile atricapillus）听觉外周的频率敏感性。
Zoology (Jena). 2015 Oct;118(5):357-63. doi: 10.1016/j.zool.2015.04.002. Epub 2015 Jun 20.
7
Failure to detect seasonal changes in the song system nuclei of the black-capped chickadee (Poecile atricapillus).未能检测到黑顶山雀（Poecile atricapillus）鸣唱系统核团的季节性变化。
J Neurobiol. 2006 Aug;66(9):991-1001. doi: 10.1002/neu.20281.
8
Discrimination of acoustically similar conspecific and heterospecific vocalizations by black-capped chickadees (Poecile atricapillus).黑头山雀（Poecile atricapillus）对声学上相似的同种和异种鸣声的辨别。
Anim Cogn. 2017 Jul;20(4):639-654. doi: 10.1007/s10071-017-1087-5. Epub 2017 Apr 9.
9
Acoustic mechanisms of note-type perception in black-capped chickadee (Poecile atricapillus) calls.黑头山雀（Poecile atricapillus）叫声中音符类型感知的声学机制。
J Comp Psychol. 2005 Nov;119(4):371-80. doi: 10.1037/0735-7036.119.4.371.
10
Black-capped (Poecile atricapillus) and mountain chickadee (Poecile gambeli) contact call contains species, sex, and individual identity features.黑头山雀（Poecile atricapillus）和高山山雀（Poecile gambeli）的接触鸣叫包含物种、性别和个体身份特征。
J Acoust Soc Am. 2010 Feb;127(2):1116-23. doi: 10.1121/1.3277247.
引用本文的文献
1
Identification of Multiple Novel Viruses in Fecal Samples of Black-Necked Cranes Using Viral Metagenomic Methods.应用病毒宏基因组学方法鉴定黑颈鹤粪便样本中的多种新型病毒。
Viruses. 2023 Oct 9;15(10):2068. doi: 10.3390/v15102068.
2
Emerging and Novel Viruses in Passerine Birds.雀形目鸟类中的新兴和新型病毒
Microorganisms. 2023 Sep 20;11(9):2355. doi: 10.3390/microorganisms11092355.
3
Family Genomoviridae: 2021 taxonomy update.家族基因组病毒科：2021 年分类学更新。
Arch Virol. 2021 Oct;166(10):2911-2926. doi: 10.1007/s00705-021-05183-y.
4
Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family .用于该科未培养单链DNA病毒分类的基于序列的分类框架。
Virus Evol. 2017 Feb 2;3(1):vew037. doi: 10.1093/ve/vew037. eCollection 2017 Jan.
5
Detection and Molecular Characterization of Gemycircularvirus from Environmental Samples in Brazil.巴西环境样本中吉米环病毒的检测与分子特征分析
Food Environ Virol. 2016 Dec;8(4):305-309. doi: 10.1007/s12560-016-9254-4. Epub 2016 Jul 8.
本文引用的文献
1
GenBank.基因银行
Nucleic Acids Res. 2015 Jan;43(Database issue):D30-5. doi: 10.1093/nar/gku1216. Epub 2014 Nov 20.
2
Novel circular single-stranded DNA virus from turkey faeces.从火鸡粪便中分离出的新型环状单链 DNA 病毒。
Arch Virol. 2014 Aug;159(8):2161-4. doi: 10.1007/s00705-014-2025-3. Epub 2014 Feb 23.
3
Database resources of the National Center for Biotechnology Information.国家生物技术信息中心数据库资源。
Nucleic Acids Res. 2014 Jan;42(Database issue):D7-17. doi: 10.1093/nar/gkt1146. Epub 2013 Nov 19.
4
BLAST: a more efficient report with usability improvements.BLAST：提高了可用性的更高效报告。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W29-33. doi: 10.1093/nar/gkt282. Epub 2013 Apr 22.
5
Discovery of a novel circular single-stranded DNA virus from porcine faeces.从猪粪便中发现一种新型环状单链 DNA 病毒。
Arch Virol. 2013 Jan;158(1):283-9. doi: 10.1007/s00705-012-1470-0. Epub 2012 Sep 13.
6
Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta).在蜻蜓（Odonata：Epiprocta）中发现了多种环状 ssDNA 病毒。
J Gen Virol. 2012 Dec;93(Pt 12):2668-2681. doi: 10.1099/vir.0.045948-0. Epub 2012 Aug 22.
7
Novel circular DNA viruses in stool samples of wild-living chimpanzees.粪便样本中野生黑猩猩新型环状 DNA 病毒。
J Gen Virol. 2010 Jan;91(Pt 1):74-86. doi: 10.1099/vir.0.015446-0. Epub 2009 Sep 16.
8
NCBI BLAST: a better web interface.美国国立生物技术信息中心基本局部比对搜索工具：一个更好的网络界面。
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W5-9. doi: 10.1093/nar/gkn201. Epub 2008 Apr 24.
9
MUSCLE: multiple sequence alignment with high accuracy and high throughput.MUSCLE：具有高精度和高吞吐量的多序列比对。
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. doi: 10.1093/nar/gkh340. Print 2004.
10
Selective trapping of circular double-stranded DNA molecules in solidifying agarose.
Plasmid. 1982 May;7(3):263-70. doi: 10.1016/0147-619x(82)90007-5.
Zotero 插件