Bartolomei M, Pirani F, Marques J M C
Consejo Superior de Investigaciones Científicas (IFF-CSIC), Instituto de Física Fundamental, Serrano 123, Madrid, 28006, Spain.
Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Italy.
J Comput Chem. 2015 Dec 5;36(31):2291-301. doi: 10.1002/jcc.24201. Epub 2015 Sep 30.
The benzene-benzene (Bz-Bz) interaction is present in several chemical systems and it is known to be crucial in understanding the specificity of important biological phenomena. In this work, we propose a novel Bz-Bz analytical potential energy surface which is fine-tuned on accurate ab initio calculations in order to improve its reliability. Once the Bz-Bz interaction is modeled, an analytical function for the energy of the Bzn clusters may be obtained by summing up over all pair potentials. We apply an evolutionary algorithm (EA) to discover the lowest-energy structures of Bzn clusters (for n=2-25), and the results are compared with previous global optimization studies where different potential functions were employed. Besides the global minimum, the EA also gives the structures of other low-lying isomers ranked by the corresponding energy. Additional ab initio calculations are carried out for the low-lying isomers of Bz3 and Bz4 clusters, and the global minimum is confirmed as the most stable structure for both sizes. Finally, a detailed analysis of the low-energy isomers of the n = 13 and 19 magic-number clusters is performed. The two lowest-energy Bz13 isomers show S6 and C3 symmetry, respectively, which is compatible with the experimental results available in the literature. The Bz19 structures reported here are all non-symmetric, showing two central Bz molecules surrounded by 12 nearest-neighbor monomers in the case of the five lowest-energy structures.
苯 - 苯(Bz - Bz)相互作用存在于多个化学体系中,并且已知其对于理解重要生物现象的特异性至关重要。在这项工作中,我们提出了一种新颖的Bz - Bz解析势能面,该势能面在精确的从头算计算基础上进行了微调,以提高其可靠性。一旦对Bz - Bz相互作用进行了建模,通过对所有对势求和,就可以得到Bzn团簇能量的解析函数。我们应用进化算法(EA)来发现Bzn团簇(n = 2 - 25)的最低能量结构,并将结果与之前采用不同势函数的全局优化研究进行比较。除了全局最小值外,EA还给出了按相应能量排序的其他低能异构体的结构。对Bz3和Bz4团簇的低能异构体进行了额外的从头算计算,并确认全局最小值是这两种尺寸下最稳定的结构。最后,对n = 13和19幻数团簇的低能异构体进行了详细分析。两个最低能量的Bz13异构体分别显示出S6和C3对称性,这与文献中可用的实验结果一致。这里报道的Bz19结构都是不对称的,在五个最低能量结构的情况下,显示出两个中心Bz分子被12个最近邻单体包围。