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10位科学家的全外显子组测序:过程与结果评估

Whole-Exome Sequencing of 10 Scientists: Evaluation of the Process and Outcomes.

作者信息

Lindor Noralane M, Schahl Kimberly A, Johnson Kiley J, Hunt Katherine S, Mensink Kara A, Wieben Eric D, Klee Eric, Black John L, Highsmith W Edward, Thibodeau Stephen N, Ferber Matthew J, Aypar Umut, Ji Yuan, Graham Rondell P, Fiksdal Alexander S, Sarangi Vivek, Ormond Kelly E, Riegert-Johnson Douglas L, McAllister Tammy M, Farrugia Gianrico, McCormick Jennifer B

机构信息

Department of Health Sciences Research, Mayo Clinic, Scottsdale, AZ; Center for Individualized Medicine, Mayo Clinic, Scottsdale, AZ.

Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN; Center for Individualized Medicine, Mayo Clinic, Rochester, MN.

出版信息

Mayo Clin Proc. 2015 Oct;90(10):1327-37. doi: 10.1016/j.mayocp.2015.05.021.

Abstract

OBJECTIVE

To understand motivations, educational needs, and concerns of individuals contemplating whole-exome sequencing (WES) and determine what amount of genetic information might be obtained by sequencing a generally healthy cohort so as to more effectively counsel future patients.

PATIENTS AND METHODS

From 2012 to 2014, 40 medically educated, generally healthy scientists at Mayo Clinic were invited to have WES conducted on a research basis; 26 agreed to be in a drawing from which 10 participants were selected. The study involved pre- and posttest genetic counseling and completion of 4 surveys related to the experience and outcomes. Whole-exome sequencing was conducted on DNA from blood from each person.

RESULTS

Most variants (76,305 per person; range, 74,505-77,387) were known benign allelic variants, variants in genes of unknown function, or variants of uncertain significance in genes of known function. The results of suspected pathogenic/pathogenic variants in Mendelian disorders and pharmacogenomic variants were disclosed. The mean number of suspected pathogenic/pathogenic variants was 2.2 per person (range, 1-4). Four pharmacogenomic genes were included for reporting; variants were found in 9 of 10 participants.

CONCLUSION

This study provides data that may be useful in establishing reality-based patient expectations, outlines specific points to cover during counseling, and increases confidence in the feasibility of providing adequate preparation and counseling for WES in generally healthy individuals.

摘要

目的

了解考虑进行全外显子组测序(WES)的个体的动机、教育需求和担忧,并确定对一般健康队列进行测序可获得的遗传信息量,以便更有效地为未来患者提供咨询。

患者与方法

2012年至2014年,邀请梅奥诊所40名受过医学教育、一般健康的科学家参与基于研究目的的WES检测;26人同意参与抽签,从中选出10名参与者。该研究包括检测前和检测后的遗传咨询以及完成4项与经历和结果相关的调查。对每个人血液中的DNA进行全外显子组测序。

结果

大多数变异(每人76,305个;范围为74,505 - 77,387个)是已知的良性等位基因变异、功能未知基因中的变异或已知功能基因中意义不确定的变异。披露了孟德尔疾病中疑似致病/致病变异和药物基因组变异的结果。疑似致病/致病变异的平均数量为每人2.2个(范围为1 - 4个)。报告纳入了4个药物基因组基因;10名参与者中有9人发现了变异。

结论

本研究提供的数据可能有助于建立基于现实的患者期望,概述咨询过程中需要涵盖的具体要点,并增强为一般健康个体进行WES充分准备和咨询的可行性的信心。

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