School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.
Department of Genetics, Evolution and Environment, University College London, London, WC1E 6BT, UK; Present address: School of Biological and Chemical Sciences, Queen Mary, University of London, London, E1 4NS, UK.
Trends Genet. 2015 Nov;31(11):637-650. doi: 10.1016/j.tig.2015.08.001. Epub 2015 Oct 1.
The molecular clock is the only viable means of establishing an accurate timescale for Life on Earth, but it remains reliant on a capricious fossil record for calibration. 'Tip-dating' promises a conceptual advance, integrating fossil species among their living relatives using molecular/morphological datasets and evolutionary models. Fossil species of known age establish calibration directly, and their phylogenetic uncertainty is accommodated through the co-estimation of time and topology. However, challenges remain, including a dearth of effective models of morphological evolution, rate correlation, the non-random nature of missing characters in fossil data, and, most importantly, accommodating uncertainty in fossil age. We show uncertainty in fossil-dating propagates to divergence-time estimates, yielding estimates that are older and less precise than those based on traditional node calibration. Ultimately, node and tip calibrations are not mutually incompatible and may be integrated to achieve more accurate and precise evolutionary timescales.
分子钟是建立地球上生命准确时间尺度的唯一可行手段,但它仍然依赖于不稳定的化石记录来进行校准。“尖端日期”有望取得概念上的进展,利用分子/形态数据集和进化模型将化石物种与其现存的近亲整合在一起。具有已知年龄的化石物种可以直接进行校准,而它们的系统发育不确定性则通过同时估计时间和拓扑结构来解决。然而,挑战依然存在,包括形态进化、速率相关性、化石数据中缺失特征的非随机性等方面的有效模型仍然缺乏,而最重要的是,化石年龄的不确定性也需要得到妥善处理。我们发现,化石日期的不确定性会传播到分歧时间估计中,导致估计的年龄更大且精度更低,这比基于传统节点校准的结果更差。最终,节点和尖端校准并非互不相容,它们可以被整合以实现更准确和精确的进化时间尺度。