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(蜻蜓目:差翅亚目:绿蟌科)的线粒体全基因组及系统发育分析

Complete Mitochondrial Genome of (Odonata: Anisoptera: Chlorogomphidae) and Phylogenetic Analyses.

作者信息

Jin Xiaoxiao, Lin Xiaojia, Wang Simeng, Fang Jie

机构信息

School of Life Sciences, Anhui University, Hefei 230601, China.

Technology Center of Hangzhou Customs District, Hangzhou 310016, China.

出版信息

Biology (Basel). 2025 May 1;14(5):493. doi: 10.3390/biology14050493.

DOI:10.3390/biology14050493
PMID:40427682
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12109563/
Abstract

This study aimed to elucidate the mitochondrial genome organization of and the phylogenetic relationships of Chlorogomphidae. We used the Illumina MiSeq sequencing platform to sequence the mitochondrial genome of , which was subsequently assembled, annotated, and analyzed. Bayesian inference, maximum likelihood, and maximum parsimony methods were employed to construct the mitochondrial phylogenetic tree of 25 species of Chlorogomphidae based on and genes. We observed that the mitochondrial genome of is 15,251 bp in length and includes 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and a non-coding control region. All PCGs start with a typical ATN codon. While , , , and end with an incomplete termination codon (T), the remaining PCGs terminate with TAG. The secondary structure of the 22 tRNAs showed that only the gene lacked the dihydrouracil arm (DHU arm), whereas the rest formed a typical cloverleaf structure. Additionally, 32 G-U mismatches were observed in the secondary structure. Phylogenetic analyses indicated that and are sister species. Divergence time analyses indicated that Chlorogomphidae originated around 111.04 Ma, with diverging from the common ancestor shared with approximately 58.51 Ma. This divergence is likely linked to the Paleocene-Eocene Thermal Maximum (PETM) and the tectonic uplift of the Himalayas, which created warm, humid habitats and contributed to geographic isolation. This study contributes to a better understanding of the mitochondrial genome and phylogeny of , providing valuable molecular markers for further genetic studies.

摘要

本研究旨在阐明[具体物种名称]的线粒体基因组组织以及溪蟌科的系统发育关系。我们使用Illumina MiSeq测序平台对[具体物种名称]的线粒体基因组进行测序,随后进行组装、注释和分析。基于[具体基因名称]和[具体基因名称]基因,采用贝叶斯推断、最大似然法和最大简约法构建了25种溪蟌科物种的线粒体系统发育树。我们观察到[具体物种名称]的线粒体基因组长度为15,251 bp,包括13个蛋白质编码基因(PCGs)、22个tRNA基因、2个rRNA基因和一个非编码控制区。所有PCGs均以典型的ATN密码子起始。虽然[具体基因名称]、[具体基因名称]、[具体基因名称]和[具体基因名称]以不完全终止密码子(T)结束,但其余PCGs以TAG终止。22个tRNA的二级结构表明,只有[具体基因名称]基因缺乏二氢尿嘧啶臂(DHU臂),而其余的形成典型的三叶草结构。此外,在二级结构中观察到32个G-U错配。系统发育分析表明[具体物种名称]和[具体物种名称]是姐妹物种。分歧时间分析表明,溪蟌科起源于约1.1104亿年前,[具体物种名称]与与[具体物种名称]共享的共同祖先大约在5851万年前分化。这种分化可能与古新世-始新世极热事件(PETM)以及喜马拉雅山脉的构造隆升有关,它们创造了温暖潮湿的栖息地并导致了地理隔离。本研究有助于更好地理解[具体物种名称]的线粒体基因组和系统发育,为进一步的遗传研究提供了有价值的分子标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/ed62629514c1/biology-14-00493-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/a247fb987cee/biology-14-00493-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/c2307c95b8bc/biology-14-00493-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/4211657d4782/biology-14-00493-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/ea442f433c35/biology-14-00493-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/ed62629514c1/biology-14-00493-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/a247fb987cee/biology-14-00493-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/c2307c95b8bc/biology-14-00493-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/4211657d4782/biology-14-00493-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/ea442f433c35/biology-14-00493-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56c6/12109563/ed62629514c1/biology-14-00493-g005.jpg

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本文引用的文献

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