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转录组分析揭示低钾胁迫下烟草幼苗基因表达的动态变化。

Transcriptome analysis reveals dynamic changes in the gene expression of tobacco seedlings under low potassium stress.

作者信息

Lu Liming, Chen Yong, Lu Lin, Lu Yifei, Li Liqin

机构信息

Agronomy College, Sichuan Agriculture University, Huimin Road 211#, Chengdu 611130, Sichuan Province, People's Republic of China.

出版信息

J Genet. 2015 Sep;94(3):397-406. doi: 10.1007/s12041-015-0532-y.

Abstract

Potassium plays a key role in plant development and reproduction. In agricultural practice, potassium deficiency is common worldwide, and leads to crop growth inhibition and output reduction. In this study, we analysed the transcriptome of tobacco seedlings under low potassium stress. Tobacco seedlings with or without decreased potassium treatment were harvested after 0 (control), 6, 12, or 24 h and were submitted for microarray analysis. The results showed that up to 3790 genes were upregulated or downregulated more than 2-fold as a result of the decreased potassium treatment. Gene ontology analysis revealed significantly differentially expressed genes that were categorized as cation binding, transcription regulation, metabolic processes, transporter activity and enzyme regulation. Some potassium, nitrogen and phosphorus transporters; transcription factors; and plant signal molecules, such as CPKs were also significantly differentially expressed under potassium deficiency. Our results indicate that the expression profiles of a large number of genes involved in various plant physiological processes are significantly altered in response to potassium deficiency, which can result in physiological and morphological changes in tobacco plants.

摘要

钾在植物发育和繁殖过程中起着关键作用。在农业生产实践中,全球范围内普遍存在钾缺乏现象,这会导致作物生长受抑和产量降低。在本研究中,我们分析了低钾胁迫下烟草幼苗的转录组。在0(对照)、6、12或24小时后,收获经过或未经低钾处理的烟草幼苗,并进行微阵列分析。结果显示,由于低钾处理,多达3790个基因的表达上调或下调超过2倍。基因本体分析揭示了显著差异表达的基因,这些基因被归类为阳离子结合、转录调控、代谢过程、转运体活性和酶调控。一些钾、氮和磷转运体;转录因子;以及植物信号分子,如钙依赖蛋白激酶(CPKs)在低钾条件下也有显著差异表达。我们的结果表明,响应低钾胁迫,大量参与各种植物生理过程的基因表达谱发生了显著改变,这可能导致烟草植株出现生理和形态变化。

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