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嗜热栖热放线菌C56-YS93的全基因组序列,该菌是从黄石国家公园黑曜石温泉中分离出的一种新型生物质降解菌。

Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park.

作者信息

Brumm Phillip J, Land Miriam L, Mead David A

机构信息

Lucigen Corporation, Middleton, WI USA ; Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, WI USA.

Oak Ridge National Laboratory, Oak Ridge, TN USA.

出版信息

Stand Genomic Sci. 2015 Oct 5;10:73. doi: 10.1186/s40793-015-0031-z. eCollection 2015.

Abstract

Geobacillus thermoglucosidasius C56-YS93 was one of several thermophilic organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. Comparison of 16 S rRNA sequences confirmed the classification of the strain as a G. thermoglucosidasius species. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). The genome of G. thermoglucosidasius C56-YS93 consists of one circular chromosome of 3,893,306 bp and two circular plasmids of 80,849 and 19,638 bp and an average G + C content of 43.93 %. G. thermoglucosidasius C56-YS93 possesses a xylan degradation cluster not found in the other G. thermoglucosidasius sequenced strains. This cluster appears to be related to the xylan degradation cluster found in G. stearothermophilus. G. thermoglucosidasius C56-YS93 possesses two plasmids not found in the other two strains. One plasmid contains a novel gene cluster coding for proteins involved in proline degradation and metabolism, the other contains a collection of mostly hypothetical proteins.

摘要

嗜热栖热放线菌C56 - YS93是在美国蒙大拿州黄石国家公园黑曜石温泉中分离出的几种嗜热生物之一,分离工作是在获得国家公园管理局许可的情况下进行的。16S rRNA序列比较证实该菌株属于嗜热栖热放线菌种。该基因组由美国能源部联合基因组研究所进行测序、组装和注释,并于2011年12月存入NCBI(登录号:CP002835)。嗜热栖热放线菌C56 - YS93的基因组由一条3,893,306 bp的环状染色体和两条分别为80,849 bp和19,638 bp的环状质粒组成,平均G + C含量为43.93%。嗜热栖热放线菌C56 - YS93拥有一个在其他已测序的嗜热栖热放线菌菌株中未发现的木聚糖降解簇。该簇似乎与嗜热脂肪芽孢杆菌中发现的木聚糖降解簇有关。嗜热栖热放线菌C56 - YS93拥有另外两个菌株中未发现的两个质粒。一个质粒包含一个编码参与脯氨酸降解和代谢的蛋白质的新基因簇,另一个包含一组大多为假设蛋白的集合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/34b9/4593210/ddac72da3a44/40793_2015_31_Fig1_HTML.jpg

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