Murphy Jesse R, Donini Stefano, Kappock T Joseph
Department of Biochemistry, Purdue University, 175 South University Street, West Lafayette, IN 47907-2063, USA.
Acta Crystallogr F Struct Biol Commun. 2015 Oct;71(Pt 10):1292-9. doi: 10.1107/S2053230X15015939. Epub 2015 Sep 23.
Citrate synthase (CS) plays a central metabolic role in aerobes and many other organisms. The CS reaction comprises two half-reactions: a Claisen aldol condensation of acetyl-CoA (AcCoA) and oxaloacetate (OAA) that forms citryl-CoA (CitCoA), and CitCoA hydrolysis. Protein conformational changes that close' the active site play an important role in the assembly of a catalytically competent condensation active site. CS from the thermoacidophile Thermoplasma acidophilum (TpCS) possesses an endogenous Trp fluorophore that can be used to monitor the condensation reaction. The 2.2 Å resolution crystal structure of TpCS fused to a C-terminal hexahistidine tag (TpCSH6) reported here is an
open' structure that, when compared with several liganded TpCS structures, helps to define a complete path for active-site closure. One active site in each dimer binds a neighboring His tag, the first nonsubstrate ligand known to occupy both the AcCoA and OAA binding sites. Solution data collectively suggest that this fortuitous interaction is stabilized by the crystalline lattice. As a polar but almost neutral ligand, the active site-tail interaction provides a new starting point for the design of bisubstrate-analog inhibitors of CS.
柠檬酸合酶(CS)在需氧生物和许多其他生物体中发挥着核心代谢作用。CS反应包括两个半反应:乙酰辅酶A(AcCoA)和草酰乙酸(OAA)的克莱森醛醇缩合形成柠檬酰辅酶A(CitCoA),以及CitCoA水解。使活性位点“关闭”的蛋白质构象变化在催化活性缩合活性位点的组装中起重要作用。嗜热嗜酸栖热菌的CS(TpCS)具有一种内源性色氨酸荧光团,可用于监测缩合反应。本文报道的与C端六组氨酸标签融合的TpCS(TpCSH6)的2.2 Å分辨率晶体结构是一种“开放”结构,与几种结合配体的TpCS结构相比,有助于确定活性位点关闭的完整路径。每个二聚体中的一个活性位点结合相邻的组氨酸标签,这是已知占据AcCoA和OAA结合位点的第一个非底物配体。溶液数据共同表明,这种偶然的相互作用通过晶格得以稳定。作为一种极性但几乎呈中性的配体,活性位点与尾部的相互作用为设计CS的双底物类似物抑制剂提供了一个新的起点。