Pratap Shivendra, Katiki Madhusudhanarao, Gill Preet, Kumar Pravindra, Golemi-Kotra Dasantila
Department of Biotechnology, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, India.
Department of Biology, York University, Toronto, Canada.
Antimicrob Agents Chemother. 2015 Oct 12;60(1):75-86. doi: 10.1128/AAC.01393-15. Print 2016 Jan.
Carbapenem-hydrolyzing class D β-lactamases (CHDLs) are a subgroup of class D β-lactamases, which are enzymes that hydrolyze β-lactams. They have attracted interest due to the emergence of multidrug-resistant Acinetobacter baumannii, which is not responsive to treatment with carbapenems, the usual antibiotics of choice for this bacterium. Unlike other class D β-lactamases, these enzymes efficiently hydrolyze carbapenem antibiotics. To explore the structural requirements for the catalysis of carbapenems by these enzymes, we determined the crystal structure of the OXA-58 CHDL of A. baumannii following acylation of its active-site serine by a 6α-hydroxymethyl penicillin derivative that is a structural mimetic for a carbapenem. In addition, several point mutation variants of the active site of OXA-58, as identified by the crystal structure analysis, were characterized kinetically. These combined studies confirm the mechanistic relevance of a hydrophobic bridge formed over the active site. This structural feature is suggested to stabilize the hydrolysis-productive acyl-enzyme species formed from the carbapenem substrates of this enzyme. Furthermore, our structural studies provide strong evidence that the hydroxyethyl group of carbapenems samples different orientations in the active sites of CHDLs, and the optimum orientation for catalysis depends on the topology of the active site allowing proper closure of the active site. We propose that CHDLs use the plasticity of the active site to drive the mechanism of carbapenem hydrolysis toward efficiency.
碳青霉烯水解D类β-内酰胺酶(CHDLs)是D类β-内酰胺酶的一个亚组,这类酶可水解β-内酰胺。由于多重耐药鲍曼不动杆菌的出现,它们引起了人们的关注,这种细菌对通常作为其首选抗生素的碳青霉烯治疗无反应。与其他D类β-内酰胺酶不同,这些酶能有效水解碳青霉烯抗生素。为了探究这些酶催化碳青霉烯的结构要求,我们通过一种6α-羟甲基青霉素衍生物对鲍曼不动杆菌的OXA-58 CHDL活性位点丝氨酸进行酰化后,确定了其晶体结构,该衍生物是碳青霉烯的结构模拟物。此外,通过晶体结构分析鉴定出的OXA-58活性位点的几个点突变变体进行了动力学表征。这些综合研究证实了活性位点上方形成的疏水桥的机制相关性。这一结构特征被认为可稳定由该酶的碳青霉烯底物形成的水解活性酰基酶物种。此外,我们的结构研究提供了有力证据,表明碳青霉烯的羟乙基在CHDLs活性位点呈现不同取向,催化的最佳取向取决于活性位点的拓扑结构,以允许活性位点适当闭合。我们提出,CHDLs利用活性位点的可塑性来推动碳青霉烯水解机制向高效方向发展。