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将近端硒代半胱氨酸配体引入细胞色素P450cam的动力学后果

Kinetic consequences of introducing a proximal selenocysteine ligand into cytochrome P450cam.

作者信息

Vandemeulebroucke An, Aldag Caroline, Stiebritz Martin T, Reiher Markus, Hilvert Donald

机构信息

Laboratory of Organic Chemistry and ‡Laboratory of Physical Chemistry, ETH Zurich , CH-8093 Zurich, Switzerland.

出版信息

Biochemistry. 2015 Nov 10;54(44):6692-703. doi: 10.1021/acs.biochem.5b00939. Epub 2015 Oct 27.

DOI:10.1021/acs.biochem.5b00939
PMID:26460790
Abstract

The structural, electronic, and catalytic properties of cytochrome P450cam are subtly altered when the cysteine that coordinates to the heme iron is replaced with a selenocysteine. To map the effects of the sulfur-to-selenium substitution on the individual steps of the catalytic cycle, we conducted a comparative kinetic analysis of the selenoenzyme and its cysteine counterpart. Our results show that the more electron-donating selenolate ligand has only negligible effects on substrate, product, and oxygen binding, electron transfer, catalytic turnover, and coupling efficiency. Off-pathway reduction of oxygen to give superoxide is the only step significantly affected by the mutation. Incorporation of selenium accelerates this uncoupling reaction approximately 50-fold compared to sulfur, but because the second electron transfer step is much faster, the impact on overall catalytic turnover is minimal. Density functional theory calculations with pure and hybrid functionals suggest that superoxide formation is governed by a delicate interplay of spin distribution, spin state, and structural effects. In light of the remarkably similar electronic structures and energies calculated for the sulfur- and selenium-containing enzymes, the ability of the heavier atom to enhance the rate of spin crossover may account for the experimental observations. Because the selenoenzyme closely mimics wild-type P450cam, even at the level of individual steps in the reaction cycle, selenium represents a unique mechanistic probe for analyzing the role of the proximal ligand and spin crossovers in P450 chemistry.

摘要

当与血红素铁配位的半胱氨酸被硒代半胱氨酸取代时,细胞色素P450cam的结构、电子和催化特性会发生细微变化。为了探究硫到硒取代对催化循环各个步骤的影响,我们对硒酶及其半胱氨酸对应物进行了比较动力学分析。我们的结果表明,供电子能力更强的硒醇盐配体对底物、产物和氧结合、电子转移、催化周转和偶联效率的影响可忽略不计。氧向超氧化物的非途径还原是唯一受该突变显著影响的步骤。与硫相比,硒的掺入使这种解偶联反应加速了约50倍,但由于第二个电子转移步骤快得多,对整体催化周转的影响很小。使用纯泛函和杂化泛函的密度泛函理论计算表明,超氧化物的形成受自旋分布、自旋态和结构效应的微妙相互作用支配。鉴于为含硫和含硒酶计算出的电子结构和能量非常相似,较重原子增强自旋交叉速率的能力可能解释了实验观察结果。由于硒酶即使在反应循环的各个步骤水平上也能紧密模拟野生型P450cam,因此硒是分析近端配体和自旋交叉在P450化学中的作用的独特机制探针。

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