• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用基因表达分析和生物信息学鉴定参与蛋壳膜形成的特定蛋白质。

Identifying specific proteins involved in eggshell membrane formation using gene expression analysis and bioinformatics.

作者信息

Du Jingwen, Hincke Maxwell T, Rose-Martel Megan, Hennequet-Antier Christelle, Brionne Aurelien, Cogburn Larry A, Nys Yves, Gautron Joel

机构信息

Department of Cellular and Molecular Medicine, University of Ottawa, 451 Smyth Road, Ottawa, K1H 8 M5, Canada.

INRA, UR83 Recherches Avicoles, F-37380, Nouzilly, France.

出版信息

BMC Genomics. 2015 Oct 15;16:792. doi: 10.1186/s12864-015-2013-3.

DOI:10.1186/s12864-015-2013-3
PMID:26470705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4608100/
Abstract

BACKGROUND

The avian eggshell membranes surround the egg white and provide a structural foundation for calcification of the eggshell which is essential for avian reproduction; moreover, it is also a natural biomaterial with many potential industrial and biomedical applications. Due to the insoluble and stable nature of the eggshell membrane fibres, their formation and protein constituents remain poorly characterized. The purpose of this study was to identify genes encoding eggshell membrane proteins, particularly those responsible for its structural features, by analyzing the transcriptome of the white isthmus segment of the oviduct, which is the specialized region responsible for the fabrication of the membrane fibres.

RESULTS

The Del-Mar 14 K chicken microarray was used to investigate up-regulated expression of transcripts in the white isthmus (WI) compared with the adjacent magnum (Ma) and uterine (Ut) segments of the hen oviduct. Analysis revealed 135 clones hybridizing to over-expressed transcripts (WI/Ma + WI/Ut), and corresponding to 107 NCBI annotated non-redundant Gallus gallus gene IDs. This combined analysis revealed that the structural proteins highly over-expressed in the white isthmus include collagen X (COL10A1), fibrillin-1 (FBN1) and cysteine rich eggshell membrane protein (CREMP). These results validate previous proteomics studies which have identified collagen X (α-1) and CREMP in soluble eggshell extracts. Genes encoding collagen-processing enzymes such as lysyl oxidase homologs 1, 2 and 3 (LOXL1, LOXL2 and LOXL3), prolyl 4 hydroxylase subunit α-2 and beta polypeptide (P4HA2 and P4HB) as well as peptidyl-prolyl cis-trans isomerase C (PPIC) were also over-expressed. Additionally, genes encoding proteins known to regulate disulfide cross-linking, including sulfhydryl oxidase (QSOX1) and thioredoxin (TXN), were identified which suggests that coordinated up-regulation of genes in the white isthmus is associated with eggshell membrane fibre formation.

CONCLUSIONS

The present study has identified genes associated with the processing of collagen, other structural proteins, and disulfide-mediated cross-linking during eggshell membrane formation in the white isthmus. Identification of these genes will provide new insight into eggshell membrane structure and mechanisms of formation that will assist in the development of selection strategies to improve eggshell quality and food safety of the table egg.

摘要

背景

禽蛋壳膜包裹着蛋清,为蛋壳钙化提供结构基础,这对禽类繁殖至关重要;此外,它还是一种天然生物材料,具有许多潜在的工业和生物医学应用。由于蛋壳膜纤维不溶性和稳定性,其形成过程及蛋白质成分仍未得到充分表征。本研究旨在通过分析输卵管白色峡部段的转录组来鉴定编码蛋壳膜蛋白的基因,特别是那些负责其结构特征的基因,该区域是负责制造膜纤维的特殊区域。

结果

使用Del-Mar 14 K鸡微阵列研究了与母鸡输卵管相邻的蛋白分泌部(Ma)和子宫部(Ut)相比,白色峡部(WI)中转录本的上调表达。分析发现135个克隆与过表达的转录本杂交(WI/Ma + WI/Ut),对应107个NCBI注释的非冗余原鸡基因ID。该综合分析表明,在白色峡部高度过表达的结构蛋白包括Ⅹ型胶原蛋白(COL10A1)、原纤蛋白-1(FBN1)和富含半胱氨酸的蛋壳膜蛋白(CREMP)。这些结果验证了先前蛋白质组学研究在可溶性蛋壳提取物中鉴定出Ⅹ型胶原蛋白(α-1)和CREMP的结果。编码胶原蛋白加工酶的基因,如赖氨酰氧化酶同源物1、2和3(LOXL1、LOXL2和LOXL3)、脯氨酰4-羟化酶亚基α-2和β多肽(P4HA2和P4HB)以及肽基脯氨酰顺反异构酶C(PPIC)也过表达。此外,还鉴定出编码已知调节二硫键交联的蛋白质的基因,包括巯基氧化酶(QSOX1)和硫氧还蛋白(TXN),这表明白色峡部基因的协同上调与蛋壳膜纤维形成有关。

结论

本研究鉴定了与白色峡部蛋壳膜形成过程中胶原蛋白、其他结构蛋白加工以及二硫键介导的交联相关的基因。这些基因的鉴定将为蛋壳膜结构及其形成机制提供新的见解,有助于制定提高食用蛋蛋壳质量和食品安全的选择策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/160c/4608100/034f4710e3ea/12864_2015_2013_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/160c/4608100/034f4710e3ea/12864_2015_2013_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/160c/4608100/034f4710e3ea/12864_2015_2013_Fig1_HTML.jpg

相似文献

1
Identifying specific proteins involved in eggshell membrane formation using gene expression analysis and bioinformatics.利用基因表达分析和生物信息学鉴定参与蛋壳膜形成的特定蛋白质。
BMC Genomics. 2015 Oct 15;16:792. doi: 10.1186/s12864-015-2013-3.
2
In-depth comparative analysis of the chicken eggshell membrane proteome.鸡蛋壳膜蛋白质组的深入比较分析。
J Proteomics. 2017 Feb 23;155:49-62. doi: 10.1016/j.jprot.2017.01.002. Epub 2017 Jan 10.
3
Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg.基因表达谱分析鉴定参与鸡卵物理防御的蛋壳蛋白。
BMC Genomics. 2010 Jan 21;11:57. doi: 10.1186/1471-2164-11-57.
4
The fabrication and collagenous substructure of the eggshell membrane in the isthmus of the hen oviduct.母鸡输卵管峡部蛋壳膜的形成及胶原亚结构
Matrix. 1991 Nov;11(5):313-20. doi: 10.1016/s0934-8832(11)80202-7.
5
Quantitative proteomics and bioinformatic analysis provide new insight into protein function during avian eggshell biomineralization.定量蛋白质组学和生物信息学分析为鸟类蛋壳生物矿化过程中的蛋白质功能提供了新的见解。
J Proteomics. 2015 Jan 15;113:178-93. doi: 10.1016/j.jprot.2014.09.024. Epub 2014 Oct 5.
6
Effects of avian infectious bronchitis virus antigen on eggshell formation and immunoreaction in hen oviduct.鸡传染性支气管炎病毒抗原对母鸡输卵管蛋壳形成和免疫反应的影响。
Theriogenology. 2014 May;81(8):1129-38. doi: 10.1016/j.theriogenology.2014.02.002. Epub 2014 Feb 8.
7
Immunolocalization of avian beta-defensins in the hen oviduct and their changes in the uterus during eggshell formation.禽类β-防御素在母鸡输卵管中的免疫定位及其在蛋壳形成过程中子宫内的变化。
Reproduction. 2009 Dec;138(6):971-8. doi: 10.1530/REP-09-0181. Epub 2009 Aug 19.
8
Ovotransferrin is a matrix protein of the hen eggshell membranes and basal calcified layer.卵转铁蛋白是鸡蛋壳膜和基部钙化层的一种基质蛋白。
Connect Tissue Res. 2001;42(4):255-67. doi: 10.3109/03008200109016840.
9
Increased collagen accumulation in eggshell membrane after feeding with dietary wood charcoal powder and vinegar.喂食木醋粉和醋后蛋壳膜中胶原蛋白的积累增加。
Connect Tissue Res. 2013;54(6):416-25. doi: 10.3109/03008207.2013.834895. Epub 2013 Oct 1.
10
Identification and localization of lysozyme as a component of eggshell membranes and eggshell matrix.溶菌酶作为蛋壳膜和蛋壳基质成分的鉴定与定位。
Matrix Biol. 2000 Sep;19(5):443-53. doi: 10.1016/s0945-053x(00)00095-0.

引用本文的文献

1
Investigation of Filtration Performances in Eggshell Ultrafiltration Membranes with Surface Functionalized Using Graphene Oxide.氧化石墨烯表面功能化的蛋壳超滤膜过滤性能研究
ACS Omega. 2024 Dec 16;9(52):51052-51061. doi: 10.1021/acsomega.4c05853. eCollection 2024 Dec 31.
2
Methionine supplementation regulates eggshell quality and uterine transcriptome in late-stage broiler breeders.补充蛋氨酸可调节后期肉种鸡的蛋壳质量和子宫转录组。
Anim Nutr. 2024 Jul 17;19:56-69. doi: 10.1016/j.aninu.2024.04.026. eCollection 2024 Dec.
3
Keratan sulfate, an electrosensory neurosentient bioresponsive cell instructive glycosaminoglycan.

本文引用的文献

1
Quantitative proteomics analysis of eggshell membrane proteins during chick embryonic development.鸡胚发育过程中蛋壳膜蛋白的定量蛋白质组学分析
J Proteomics. 2016 Jan 1;130:11-25. doi: 10.1016/j.jprot.2015.08.014. Epub 2015 Sep 5.
2
Quantitative proteomics provides new insights into chicken eggshell matrix protein functions during the primary events of mineralisation and the active calcification phase.定量蛋白质组学为了解鸡卵壳基质蛋白在矿化初期事件和活跃钙化阶段的功能提供了新的见解。
J Proteomics. 2015 Aug 3;126:140-54. doi: 10.1016/j.jprot.2015.05.034. Epub 2015 Jun 3.
3
Amorphous calcium carbonate controls avian eggshell mineralization: A new paradigm for understanding rapid eggshell calcification.
硫酸角质素,一种电感觉神经反应性细胞指令性糖胺聚糖。
Glycobiology. 2024 Apr 1;34(3). doi: 10.1093/glycob/cwae014.
4
Genome-Wide Analysis of lncRNA and mRNA Expression in the Uterus of Laying Hens during Aging.在产蛋鸡衰老过程中子宫内 lncRNA 和 mRNA 表达的全基因组分析。
Genes (Basel). 2023 Mar 3;14(3):639. doi: 10.3390/genes14030639.
5
Proteomic Analysis of Chicken Chorioallantoic Membrane (CAM) during Embryonic Development Provides Functional Insight.鸡胚绒毛尿囊膜(CAM)在胚胎发育过程中的蛋白质组学分析提供了功能见解。
Biomed Res Int. 2022 Jun 19;2022:7813921. doi: 10.1155/2022/7813921. eCollection 2022.
6
The diverse terminology of reptile eggshell microstructure and its effect on phylogenetic comparative analyses.爬行动物蛋壳微观结构的多样化术语及其对系统发育比较分析的影响。
J Anat. 2022 Sep;241(3):641-666. doi: 10.1111/joa.13723. Epub 2022 Jun 27.
7
Cuticle deposition duration in the uterus is correlated with eggshell cuticle quality in White Leghorn laying hens.蛋壳内壳层在子宫内的沉积时间与白来航鸡种母鸡的蛋壳内壳层质量相关。
Sci Rep. 2021 Nov 11;11(1):22100. doi: 10.1038/s41598-021-01718-0.
8
Avian eggshell biomineralization: an update on its structure, mineralogy and protein tool kit.禽类蛋壳生物矿化:结构、矿物学及蛋白质工具包的最新研究进展。
BMC Mol Cell Biol. 2021 Feb 12;22(1):11. doi: 10.1186/s12860-021-00350-0.
9
Albumen Quality of Fresh and Stored Table Eggs: Hen Genotype as a Further Chance for Consumer Choice.新鲜和储存食用鸡蛋的蛋白品质:母鸡基因型为消费者选择提供更多可能
Animals (Basel). 2021 Jan 10;11(1):135. doi: 10.3390/ani11010135.
10
Identification of Age-Specific and Common Key Regulatory Mechanisms Governing Eggshell Strength in Chicken Using Random Forests.利用随机森林法鉴定调控鸡蛋壳强度的年龄特异性和共同关键调控机制
Genes (Basel). 2020 Apr 24;11(4):464. doi: 10.3390/genes11040464.
无定形碳酸钙控制鸟类蛋壳矿化:理解蛋壳快速钙化的新范式。
J Struct Biol. 2015 Jun;190(3):291-303. doi: 10.1016/j.jsb.2015.04.014. Epub 2015 Apr 28.
4
Novel identification of matrix proteins involved in calcitic biomineralization.参与方解石生物矿化的基质蛋白的新鉴定。
J Proteomics. 2015 Feb 26;116:81-96. doi: 10.1016/j.jprot.2015.01.002. Epub 2015 Jan 10.
5
Quantitative proteomics and bioinformatic analysis provide new insight into protein function during avian eggshell biomineralization.定量蛋白质组学和生物信息学分析为鸟类蛋壳生物矿化过程中的蛋白质功能提供了新的见解。
J Proteomics. 2015 Jan 15;113:178-93. doi: 10.1016/j.jprot.2014.09.024. Epub 2014 Oct 5.
6
Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process.母鸡子宫在蛋壳形成过程中的基因表达谱分析揭示了可能参与矿物质供应或蛋壳矿化过程的蛋白质。
BMC Genomics. 2014 Mar 21;15:220. doi: 10.1186/1471-2164-15-220.
7
Differential label-free quantitative proteomic analysis of avian eggshell matrix and uterine fluid proteins associated with eggshell mechanical property.禽蛋壳基质和与蛋壳机械性能相关的子宫液蛋白的差异无标记定量蛋白质组学分析。
Proteomics. 2013 Dec;13(23-24):3523-36. doi: 10.1002/pmic.201300286.
8
A secreted disulfide catalyst controls extracellular matrix composition and function.一种分泌的二硫键催化剂控制细胞外基质的组成和功能。
Science. 2013 Jul 5;341(6141):74-6. doi: 10.1126/science.1238279. Epub 2013 May 23.
9
Avian host defense peptides.禽类宿主防御肽。
Dev Comp Immunol. 2013 Nov;41(3):352-69. doi: 10.1016/j.dci.2013.04.019. Epub 2013 May 3.
10
Solubilization and identification of hen eggshell membrane proteins during different times of chicken embryo development using the proteomic approach.采用蛋白质组学方法研究鸡胚发育不同时期蛋清膜蛋白的增溶和鉴定。
Protein J. 2013 Apr;32(4):297-308. doi: 10.1007/s10930-013-9487-0.