Shalaeva Daria N, Galperin Michael Y, Mulkidjanian Armen Y
School of Physics, Osnabrueck University, 49069, Osnabrueck, Germany.
School of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, 119992, Russia.
Biol Direct. 2015 Oct 15;10:63. doi: 10.1186/s13062-015-0091-4.
Microbial rhodopsins and G-protein coupled receptors (GPCRs, which include animal rhodopsins) are two distinct (super) families of heptahelical (7TM) membrane proteins that share obvious structural similarities but no significant sequence similarity. Comparison of the recently solved high-resolution structures of the sodium-translocating bacterial rhodopsin and various Na(+)-binding GPCRs revealed striking similarity of their sodium-binding sites. This similarity allowed us to construct a structure-guided sequence alignment for the two (super)families, which highlighted their evolutionary relatedness. Our analysis supports a common underlying molecular mechanism for both families that involves a highly conserved aromatic residue playing a pivotal role in rotation of the 6th transmembrane helix.
微生物视紫红质和G蛋白偶联受体(GPCR,包括动物视紫红质)是七螺旋(7TM)膜蛋白的两个不同的(超)家族,它们具有明显的结构相似性,但没有显著的序列相似性。最近解析的钠转运细菌视紫红质和各种Na⁺结合GPCR的高分辨率结构比较显示,它们的钠结合位点具有惊人的相似性。这种相似性使我们能够构建这两个(超)家族的结构导向序列比对,突出了它们的进化相关性。我们的分析支持这两个家族存在共同的潜在分子机制,其中一个高度保守的芳香族残基在第6个跨膜螺旋的旋转中起关键作用。