Kim Hyo Jung, Kwon Ae-Ran, Lee Bong-Jin
Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Gwanak-gu, Seoul 151-742, Republic of Korea.
Department of Herbal Skin Care, College of Herbal Bio-industry, Daegu Haany University, Gyeongsan 712-715, Republic of Korea.
Biochem J. 2016 Jan 1;473(1):55-66. doi: 10.1042/BJ20150256. Epub 2015 Oct 20.
The DJ-1/ThiJ/PfpI superfamily is a group of proteins found in diverse organisms. This superfamily includes versatile proteins, such as proteases, chaperones, heat-shock proteins and human Parkinson's disease protein. Most members of the DJ-1/ThiJ/PfpI superfamily are oligomers and are classified into subfamilies depending on discriminating quaternary structures (DJ-1, YhbO and Hsp types). SAV1875, a conserved protein from Staphylococcus aureus, is a member of the YhbO-type subfamily. However, its structure and function remain unknown. Thus, to understand the function and activity mechanism of this protein, the crystal structure of SAV1875 from S. aureus was determined. The overall fold of SAV1875 is similar to that observed for the DJ-1/ThiJ/PfpI superfamily. The cysteine residue located in the dimeric interface (Cys(105)) forms a catalytic triad with His(106) and Asp(77), and it is spontaneously oxidized to Cys(105)-SO2H in the crystal structure. To study the oxidative propensity of Cys(105) and the corresponding functional differences with changes in cysteine oxidation state, the crystal structures of SAV1875 variants E17N, E17D and C105D, and over-oxidized SAV1875 were determined. We identified SAV1875 as a novel member of the YhbO-type subfamily exhibiting chaperone function. However, if SAV1875 is over-oxidized further with H2O2, its chaperone activity is eliminated. On the basis of our study, we suggest that SAV1875 functions as a chaperone and the redox state of Cys(105) may play an important role.
DJ-1/ThiJ/PfpI超家族是一类在多种生物中发现的蛋白质。这个超家族包括多种功能的蛋白质,如蛋白酶、伴侣蛋白、热休克蛋白和人类帕金森病蛋白。DJ-1/ThiJ/PfpI超家族的大多数成员都是寡聚体,并根据不同的四级结构(DJ-1、YhbO和Hsp类型)分为亚家族。金黄色葡萄球菌的保守蛋白SAV1875是YhbO型亚家族的成员。然而,其结构和功能仍然未知。因此,为了了解该蛋白的功能和活性机制,我们测定了金黄色葡萄球菌SAV1875的晶体结构。SAV1875的整体折叠结构与DJ-1/ThiJ/PfpI超家族中观察到的相似。位于二聚体界面的半胱氨酸残基(Cys(105))与His(106)和Asp(77)形成催化三联体,并且在晶体结构中它自发氧化为Cys(105)-SO2H。为了研究Cys(105)的氧化倾向以及半胱氨酸氧化态变化对应的功能差异,我们测定了SAV1875变体E17N、E17D和C105D以及过度氧化的SAV1875的晶体结构。我们确定SAV1875是具有伴侣功能的YhbO型亚家族的一个新成员。然而,如果用H2O2进一步过度氧化SAV1875,其伴侣活性就会丧失。基于我们的研究,我们认为SAV1875作为伴侣蛋白发挥作用,并且Cys(105)的氧化还原状态可能起重要作用。