Kim P, Lee D-S, Kahng B
Center for Complex Systems Studies and CTP, Department of Physics and Astronomy, Seoul National University, Seoul 151-747, Korea.
Department of Physics, Inha University, Incheon 402-751, Korea.
Sci Rep. 2015 Oct 22;5:15567. doi: 10.1038/srep15567.
The maintenance of stability during perturbations is essential for living organisms, and cellular networks organize multiple pathways to enable elements to remain connected and communicate, even when some pathways are broken. Here, we evaluated the biconnectivity of the metabolic networks of 506 species in terms of the clustering coefficients and the largest biconnected components (LBCs), wherein a biconnected component (BC) indicates a set of nodes in which every pair is connected by more than one path. Via comparison with the rewired networks, we illustrated how biconnectivity in cellular metabolism is achieved on small and large scales. Defining the biconnectivity of individual metabolic compounds by counting the number of species in which the compound belonged to the LBC, we demonstrated that biconnectivity is significantly correlated with the evolutionary age and functional importance of a compound. The prevalence of diseases associated with each metabolic compound quantifies the compounds vulnerability, i.e., the likelihood that it will cause a metabolic disorder. Moreover, the vulnerability depends on both the biconnectivity and the lethality of the compound. This fact can be used in drug discovery and medical treatments.
在受到干扰时维持稳定性对生物至关重要,细胞网络组织了多条途径,以使各组成部分即使在某些途径被破坏时仍能保持连接和通信。在此,我们根据聚类系数和最大双连通分量(LBC)评估了506个物种代谢网络的双连通性,其中双连通分量(BC)表示一组节点,该组中每对节点都由多条路径相连。通过与重新布线的网络进行比较,我们展示了细胞代谢中的双连通性在小尺度和大尺度上是如何实现的。通过计算某化合物所属LBC的物种数量来定义单个代谢化合物的双连通性,我们证明双连通性与化合物的进化年龄和功能重要性显著相关。与每种代谢化合物相关的疾病流行程度量化了该化合物的脆弱性,即其导致代谢紊乱的可能性。此外,脆弱性取决于化合物的双连通性和致死性。这一事实可用于药物发现和医学治疗。