Bolus Herbarium, Biological Sciences Department, University of Cape Town, Private Bag X3, Rondebosch 7700, South Africa
Department of Plant Science, University of Pretoria, Private Bag X20, Hatfield 0028, Pretoria, South Africa.
AoB Plants. 2015 Oct 27;7:plv124. doi: 10.1093/aobpla/plv124.
Large-scale DNA barcoding provides a new technique for species identification and evaluation of relationships across various levels (populations and species) and may reveal fundamental processes in recently diverged species. Here, we analysed DNA sequence variation in the recently diverged legumes from the Psoraleeae (Fabaceae) occurring in the Cape Floristic Region (CFR) of southern Africa to test the utility of DNA barcodes in species identification and discrimination. We further explored the phylogenetic signal on fire response trait (reseeding and resprouting) at species and generic levels. We showed that Psoraleoid legumes of the CFR exhibit a barcoding gap yielding the combination of matK and rbcLa (matK + rbcLa) data set as a better barcode than single regions. We found a high score (100 %) of correct identification of individuals to their respective genera but a very low score (<50 %) in identifying them to species. We found a considerable match (54 %) between genetic species and morphologically delimited species. We also found that different lineages showed a weak but significant phylogenetic conservatism in their response to fire as reseeders or resprouters, with more clustering of resprouters than would be expected by chance. These novel microevolutionary patterns might be acting continuously over time to produce multi-scale regularities of biodiversity. This study provides the first insight into the DNA barcoding campaign of land plants in species identification and detection of the phylogenetic signal in recently diverged lineages of the CFR.
大规模 DNA 条形码为物种鉴定和评估提供了一种新技术,适用于不同层次(种群和物种)的关系,并且可能揭示最近分化物种的基本过程。在这里,我们分析了发生在南非开普植物区系(CFR)的 Psoraleeae(豆科)中最近分化的豆科植物的 DNA 序列变异,以检验 DNA 条形码在物种鉴定和区分中的实用性。我们进一步探讨了在物种和属水平上与火响应特征(再播种和更新)相关的系统发育信号。我们表明,CFR 的 Psoraleoid 豆科植物表现出条形码间隙,产生了 matK 和 rbcLa(matK + rbcLa)数据集的组合,比单个区域更适合作为条形码。我们发现,个体与其各自属的正确识别率很高(100%),但识别到物种的准确率却很低(<50%)。我们发现遗传物种与形态学界定的物种之间有相当大的匹配(54%)。我们还发现,不同的谱系在作为再播种者或更新者对火的反应中表现出微弱但显著的系统发育保守性,更新者的聚类比预期的随机聚类更为明显。这些新的微观进化模式可能会随着时间的推移不断发挥作用,从而产生生物多样性的多尺度规律。本研究首次深入了解了 CFR 中最近分化谱系的物种鉴定和 DNA 条形码检测中的系统发育信号的陆地植物 DNA 条形码运动。