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人类和非人类灵长类动物的遗传多样性及其进化后果。

Genetic diversity in humans and non-human primates and its evolutionary consequences.

作者信息

Osada Naoki

机构信息

Department of Population Genetics, National Institute of Genetics.

出版信息

Genes Genet Syst. 2015;90(3):133-45. doi: 10.1266/ggs.90.133.

Abstract

Genetic diversity is a key parameter in population genetics and is important for understanding the process of evolution and for the development of appropriate conservation strategies. Recent advances in sequencing technology have enabled the measurement of genetic diversity of various organisms at the nucleotide level and on a genome-wide scale, yielding more precise estimates than were previously achievable. In this review, I have compiled and summarized the estimates of genetic diversity in humans and non-human primates based on recent genome-wide studies. Although studies on population genetics demonstrated fluctuations in population sizes over time, general patterns have emerged. As shown previously, genetic diversity in humans is one of the lowest among primates; however, certain other primate species exhibit genetic diversity that is comparable to or even lower than that in humans. There exists greater than 10-fold variation in genetic diversity among primate species, and I found weak correlation with species fecundity but not with body or propagule size. I further discuss the potential evolutionary consequences of population size decline on the evolution of primate species. The level of genetic diversity negatively correlates with the ratio of non-synonymous to synonymous polymorphisms in a population, suggesting that proportionally greater numbers of slightly deleterious mutations segregate in small rather than large populations. Although population size decline is likely to promote the fixation of slightly deleterious mutations, there are molecular mechanisms, such as compensatory mutations at various molecular levels, which may prevent fitness decline at the population level. The effects of slightly deleterious mutations from theoretical and empirical studies and their relevance to conservation biology are also discussed in this review.

摘要

遗传多样性是群体遗传学中的一个关键参数,对于理解进化过程以及制定合适的保护策略至关重要。测序技术的最新进展使得能够在核苷酸水平和全基因组范围内测量各种生物体的遗传多样性,从而得出比以前更精确的估计值。在这篇综述中,我根据最近的全基因组研究汇编并总结了人类和非人类灵长类动物的遗传多样性估计值。尽管群体遗传学研究表明种群大小随时间波动,但总体模式已经显现。如先前所示,人类的遗传多样性在灵长类动物中是最低的之一;然而,某些其他灵长类物种的遗传多样性与人类相当甚至更低。灵长类物种之间的遗传多样性存在超过10倍的差异,我发现其与物种繁殖力的相关性较弱,但与体型或繁殖体大小无关。我进一步讨论了种群大小下降对灵长类物种进化的潜在进化后果。遗传多样性水平与种群中非同义多态性与同义多态性的比例呈负相关,这表明在小种群中,比例上有更多的轻度有害突变在分离,而不是在大种群中。尽管种群大小下降可能会促进轻度有害突变的固定,但存在一些分子机制,如各种分子水平的补偿性突变,这可能会防止种群水平的适应性下降。本综述还讨论了来自理论和实证研究的轻度有害突变的影响及其与保护生物学的相关性。

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