• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

组蛋白H3内的不同残基决定了酿酒酵母中独特的染色质结构。

Divergent Residues Within Histone H3 Dictate a Unique Chromatin Structure in Saccharomyces cerevisiae.

作者信息

McBurney Kristina L, Leung Andrew, Choi Jennifer K, Martin Benjamin J E, Irwin Nicholas A T, Bartke Till, Nelson Christopher J, Howe LeAnn J

机构信息

Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.

Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada V8P 5C2.

出版信息

Genetics. 2016 Jan;202(1):341-9. doi: 10.1534/genetics.115.180810. Epub 2015 Nov 3.

DOI:10.1534/genetics.115.180810
PMID:26534951
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4701097/
Abstract

Histones are among the most conserved proteins known, but organismal differences do exist. In this study, we examined the contribution that divergent amino acids within histone H3 make to cell growth and chromatin structure in Saccharomyces cerevisiae. We show that, while amino acids that define histone H3.3 are dispensable for yeast growth, substitution of residues within the histone H3 α3 helix with human counterparts results in a severe growth defect. Mutations within this domain also result in altered nucleosome positioning, both in vivo and in vitro, which is accompanied by increased preference for nucleosome-favoring sequences. These results suggest that divergent amino acids within the histone H3 α3 helix play organismal roles in defining chromatin structure.

摘要

组蛋白是已知最保守的蛋白质之一,但生物体之间的差异确实存在。在本研究中,我们研究了组蛋白H3中不同氨基酸对酿酒酵母细胞生长和染色质结构的影响。我们发现,虽然定义组蛋白H3.3的氨基酸对酵母生长并非必需,但将组蛋白H3 α3螺旋内的残基替换为人源对应残基会导致严重的生长缺陷。该结构域内的突变还会导致体内和体外核小体定位改变,同时对核小体偏好序列的偏好增加。这些结果表明,组蛋白H3 α3螺旋内的不同氨基酸在定义染色质结构中发挥着生物体特异性作用。

相似文献

1
Divergent Residues Within Histone H3 Dictate a Unique Chromatin Structure in Saccharomyces cerevisiae.组蛋白H3内的不同残基决定了酿酒酵母中独特的染色质结构。
Genetics. 2016 Jan;202(1):341-9. doi: 10.1534/genetics.115.180810. Epub 2015 Nov 3.
2
Analysis of primary structural determinants that distinguish the centromere-specific function of histone variant Cse4p from histone H3.区分组蛋白变体Cse4p与组蛋白H3着丝粒特异性功能的一级结构决定因素分析
Mol Cell Biol. 1999 Sep;19(9):6130-9. doi: 10.1128/MCB.19.9.6130.
3
Unique yeast histone sequences influence octamer and nucleosome stability.独特的酵母组蛋白序列影响八聚体和核小体的稳定性。
FEBS Lett. 2016 Aug;590(16):2629-38. doi: 10.1002/1873-3468.12266. Epub 2016 Jul 26.
4
In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae.组蛋白 H3 耗竭对酿酒酵母核小体占有率和位置的体内影响。
PLoS Genet. 2012;8(6):e1002771. doi: 10.1371/journal.pgen.1002771. Epub 2012 Jun 21.
5
Sin mutations of histone H3: influence on nucleosome core structure and function.组蛋白H3的单氨基酸突变:对核小体核心结构和功能的影响
Mol Cell Biol. 1997 Dec;17(12):6953-69. doi: 10.1128/MCB.17.12.6953.
6
Comprehensive structural analysis of mutant nucleosomes containing lysine to glutamine (KQ) substitutions in the H3 and H4 histone-fold domains.突变核小体的综合结构分析,这些核小体在 H3 和 H4 组蛋白折叠结构域中含有赖氨酸到谷氨酰胺(KQ)取代。
Biochemistry. 2011 Sep 13;50(36):7822-32. doi: 10.1021/bi201021h. Epub 2011 Aug 17.
7
Analysis of Saccharomyces cerevisiae histone H3 mutants reveals the role of the alphaN helix in nucleosome function.酿酒酵母组蛋白H3突变体分析揭示了αN螺旋在核小体功能中的作用。
Biochem Biophys Res Commun. 2008 Sep 26;374(3):543-8. doi: 10.1016/j.bbrc.2008.07.084. Epub 2008 Jul 25.
8
Nucleosome fractionation by mercury affinity chromatography. Contrasting distribution of transcriptionally active DNA sequences and acetylated histones in nucleosome fractions of wild-type yeast cells and cells expressing a histone H3 gene altered to encode a cysteine 110 residue.通过汞亲和色谱法进行核小体分级分离。野生型酵母细胞和表达经改造以编码第110位半胱氨酸残基的组蛋白H3基因的细胞的核小体分级分离物中转录活性DNA序列和乙酰化组蛋白的对比分布。
J Biol Chem. 1991 Apr 5;266(10):6489-98.
9
Silencing near tRNA genes is nucleosome-mediated and distinct from boundary element function.沉默临近 tRNA 基因是核小体介导的,与边界元件功能不同。
Gene. 2013 Aug 15;526(1):7-15. doi: 10.1016/j.gene.2013.05.016. Epub 2013 May 23.
10
The Ddc1-Mec3-Rad17 sliding clamp regulates histone-histone chaperone interactions and DNA replication-coupled nucleosome assembly in budding yeast.Ddc1-Mec3-Rad17 滑动夹调控组蛋白-组蛋白伴侣相互作用和芽殖酵母中复制偶联的核小体组装。
J Biol Chem. 2014 Apr 11;289(15):10518-10529. doi: 10.1074/jbc.M114.552463. Epub 2014 Feb 25.

引用本文的文献

1
Trapping of yFACT at 3' ends of genes is not a universal characteristic of yeast versions of Bryant-Li-Bhoj syndrome histone H3 mutants.在基因3'端捕获yFACT并非Bryant-Li-Bhoj综合征组蛋白H3突变体酵母版本的普遍特征。
MicroPubl Biol. 2024 Oct 25;2024. doi: 10.17912/micropub.biology.001384. eCollection 2024.
2
Dependence of nucleosome mechanical stability on DNA mismatches.核小体机械稳定性对DNA错配的依赖性。
Elife. 2024 Apr 24;13:RP95514. doi: 10.7554/eLife.95514.
3
Exploring the Molecular Underpinnings of Cancer-Causing Oncohistone Mutants Using Yeast as a Model.以酵母为模型探索致癌性癌组蛋白突变体的分子基础
J Fungi (Basel). 2023 Dec 11;9(12):1187. doi: 10.3390/jof9121187.
4
Histone 3.3-related chromatinopathy: missense variants throughout H3-3A and H3-3B cause a range of functional consequences across species.组蛋白 3.3 相关染色质病:H3-3A 和 H3-3B 中的错义变体在物种间引起一系列功能后果。
Hum Genet. 2024 Apr;143(4):497-510. doi: 10.1007/s00439-023-02536-2. Epub 2023 Mar 3.
5
Dominant effects of the histone mutant H3-L61R on Spt16-gene interactions in budding yeast.组蛋白突变体 H3-L61R 对出芽酵母中 Spt16 基因相互作用的显性效应。
Epigenetics. 2022 Dec;17(13):2347-2355. doi: 10.1080/15592294.2022.2121073. Epub 2022 Sep 8.
6
The functional study of human proteins using humanized yeast.利用人源化酵母研究人类蛋白质的功能。
J Microbiol. 2020 May;58(5):343-349. doi: 10.1007/s12275-020-0136-y. Epub 2020 Apr 27.
7
Resetting the Yeast Epigenome with Human Nucleosomes.用人核小体重设酵母表观基因组
Cell. 2017 Dec 14;171(7):1508-1519.e13. doi: 10.1016/j.cell.2017.10.043. Epub 2017 Nov 30.
8
Basic surface features of nuclear FKBPs facilitate chromatin binding.核 FKBPs 的基本表面特征有利于与染色质结合。
Sci Rep. 2017 Jun 19;7(1):3795. doi: 10.1038/s41598-017-04194-7.

本文引用的文献

1
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.利用Micro-C技术绘制酵母中核小体分辨率的染色体折叠图谱。
Cell. 2015 Jul 2;162(1):108-19. doi: 10.1016/j.cell.2015.05.048. Epub 2015 Jun 25.
2
Mechanisms underlying nucleosome positioning in vivo.体内核小体定位的机制。
Annu Rev Biophys. 2014;43:41-63. doi: 10.1146/annurev-biophys-051013-023114.
3
H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.H3.3 通过打开高级有序染色质积极标记增强子并启动基因转录。
Genes Dev. 2013 Oct 1;27(19):2109-24. doi: 10.1101/gad.222174.113. Epub 2013 Sep 24.
4
A comparative evaluation on prediction methods of nucleosome positioning.核小体定位预测方法的比较评价。
Brief Bioinform. 2014 Nov;15(6):1014-27. doi: 10.1093/bib/bbt062. Epub 2013 Sep 10.
5
A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription.核小体和转录谱摘要揭示了染色质结构和转录的决定因素。
PLoS Genet. 2013 May;9(5):e1003479. doi: 10.1371/journal.pgen.1003479. Epub 2013 May 2.
6
Dissecting the roles of the histone chaperones reveals the evolutionary conserved mechanism of transcription-coupled deposition of H3.3.解析组蛋白伴侣的作用揭示了转录偶联的 H3.3 沉积的进化保守机制。
Nucleic Acids Res. 2013 May 1;41(10):5199-209. doi: 10.1093/nar/gkt220. Epub 2013 Apr 5.
7
Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae.在酿酒酵母中,组蛋白 H3K4 的去甲基化受到组蛋白 H3 乙酰化的负调控。
Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18505-10. doi: 10.1073/pnas.1202070109. Epub 2012 Oct 22.
8
In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae.组蛋白 H3 耗竭对酿酒酵母核小体占有率和位置的体内影响。
PLoS Genet. 2012;8(6):e1002771. doi: 10.1371/journal.pgen.1002771. Epub 2012 Jun 21.
9
Chromatin and transcription in yeast.酵母中的染色质与转录。
Genetics. 2012 Feb;190(2):351-87. doi: 10.1534/genetics.111.132266.
10
Understanding histone acetyltransferase Rtt109 structure and function: how many chaperones does it take?了解组蛋白乙酰转移酶 Rtt109 的结构和功能:需要多少伴侣蛋白?
Curr Opin Struct Biol. 2011 Dec;21(6):728-34. doi: 10.1016/j.sbi.2011.09.005. Epub 2011 Oct 23.