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组蛋白 3.3 相关染色质病:H3-3A 和 H3-3B 中的错义变体在物种间引起一系列功能后果。

Histone 3.3-related chromatinopathy: missense variants throughout H3-3A and H3-3B cause a range of functional consequences across species.

机构信息

Division of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.

出版信息

Hum Genet. 2024 Apr;143(4):497-510. doi: 10.1007/s00439-023-02536-2. Epub 2023 Mar 3.

DOI:10.1007/s00439-023-02536-2
PMID:36867246
Abstract

There has been considerable recent interest in the role that germline variants in histone genes play in Mendelian syndromes. Specifically, missense variants in H3-3A and H3-3B, which both encode Histone 3.3, were discovered to cause a novel neurodevelopmental disorder, Bryant-Li-Bhoj syndrome. Most of the causative variants are private and scattered throughout the protein, but all seem to have either a gain-of-function or dominant negative effect on protein function. This is highly unusual and not well understood. However, there is extensive literature about the effects of Histone 3.3 mutations in model organisms. Here, we collate the previous data to provide insight into the elusive pathogenesis of missense variants in Histone 3.3.

摘要

近年来,人们对组蛋白基因中的种系变异在孟德尔综合征中的作用产生了浓厚的兴趣。具体来说,编码组蛋白 3.3 的 H3-3A 和 H3-3B 中的错义变异被发现会导致一种新的神经发育障碍,即 Bryant-Li-Bhoj 综合征。大多数致病变异是私有的,分布在整个蛋白质中,但似乎都对蛋白质功能具有获得性功能或显性负效应。这是非常不寻常的,也不太理解。然而,关于组蛋白 3.3 突变在模式生物中的影响有大量文献。在这里,我们整理了以前的数据,以深入了解组蛋白 3.3 中错义变异的难以捉摸的发病机制。

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1
Histone 3.3-related chromatinopathy: missense variants throughout H3-3A and H3-3B cause a range of functional consequences across species.组蛋白 3.3 相关染色质病:H3-3A 和 H3-3B 中的错义变体在物种间引起一系列功能后果。
Hum Genet. 2024 Apr;143(4):497-510. doi: 10.1007/s00439-023-02536-2. Epub 2023 Mar 3.
2
Expanded phenotypic spectrum of neurodevelopmental and neurodegenerative disorder Bryant-Li-Bhoj syndrome with 38 additional individuals.伴有38例新增个体的神经发育和神经退行性疾病Bryant-Li-Bhoj综合征的扩展表型谱。
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3
A novel iPSC model of Bryant-Li-Bhoj neurodevelopmental syndrome demonstrates the role of histone H3.3 in neuronal differentiation and maturation.一种新型的布赖恩特-李-博杰神经发育综合征诱导多能干细胞模型揭示了组蛋白H3.3在神经元分化和成熟中的作用。
bioRxiv. 2024 Aug 26:2024.08.26.609745. doi: 10.1101/2024.08.26.609745.
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Rare germline heterozygous missense variants in BRCA1-associated protein 1, BAP1, cause a syndromic neurodevelopmental disorder.BRCA1 相关蛋白 1(BAP1)种系杂合错义变异罕见,可导致一种综合征性神经发育障碍。
Am J Hum Genet. 2022 Feb 3;109(2):361-372. doi: 10.1016/j.ajhg.2021.12.011. Epub 2022 Jan 19.
5
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A clustering of heterozygous missense variants in the crucial chromatin modifier WDR5 defines a new neurodevelopmental disorder.关键染色质修饰物 WDR5 中的杂合错义变异簇定义了一种新的神经发育障碍。
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Histone Variant H3.3 Mutations in Defining the Chromatin Function in Mammals.组蛋白变体 H3.3 突变在哺乳动物染色质功能定义中的作用。
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Histone H3.3 and cancer: A potential reader connection.组蛋白H3.3与癌症:一种潜在的“读取器”关联
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引用本文的文献

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Histone variants: expanding the epigenetic potential of neurons one amino acid at a time.组蛋白变体:一次一个氨基酸地扩展神经元的表观遗传潜能。
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2
Trapping of yFACT at 3' ends of genes is not a universal characteristic of yeast versions of Bryant-Li-Bhoj syndrome histone H3 mutants.在基因3'端捕获yFACT并非Bryant-Li-Bhoj综合征组蛋白H3突变体酵母版本的普遍特征。
MicroPubl Biol. 2024 Oct 25;2024. doi: 10.17912/micropub.biology.001384. eCollection 2024.
3
Involvement of the H3.3 Histone Variant in the Epigenetic Regulation of Gene Expression in the Nervous System, in Both Physiological and Pathological Conditions.

本文引用的文献

1
A standardized nomenclature for mammalian histone genes.哺乳动物组蛋白基因的标准化命名法。
Epigenetics Chromatin. 2022 Oct 1;15(1):34. doi: 10.1186/s13072-022-00467-2.
2
Dominant effects of the histone mutant H3-L61R on Spt16-gene interactions in budding yeast.组蛋白突变体 H3-L61R 对出芽酵母中 Spt16 基因相互作用的显性效应。
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A specific role for importin-5 and NASP in the import and nuclear hand-off of monomeric H3.importin-5 和 NASP 在单体 H3 的入核输入和核交接中的特定作用。
组蛋白 H3.3 变体在神经系统中基因表达的表观遗传调控中的作用,无论是在生理还是病理条件下。
Int J Mol Sci. 2023 Jul 3;24(13):11028. doi: 10.3390/ijms241311028.
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4
Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.新生皮质神经元中组蛋白变体 H3.3 的后有丝分裂积累建立了神经元染色质、转录组和身份。
Proc Natl Acad Sci U S A. 2022 Aug 9;119(32):e2116956119. doi: 10.1073/pnas.2116956119. Epub 2022 Aug 5.
5
NASP maintains histone H3-H4 homeostasis through two distinct H3 binding modes.NASP 通过两种不同的 H3 结合模式维持组蛋白 H3-H4 的平衡。
Nucleic Acids Res. 2022 May 20;50(9):5349-5368. doi: 10.1093/nar/gkac303.
6
Histone H3.3 phosphorylation promotes heterochromatin formation by inhibiting H3K9/K36 histone demethylase.组蛋白 H3.3 磷酸化通过抑制 H3K9/K36 组蛋白去甲基化酶促进异染色质形成。
Nucleic Acids Res. 2022 May 6;50(8):4500-4514. doi: 10.1093/nar/gkac259.
7
The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase.唇形科植物中百里香酚、香芹酚和百里香醌的生物合成途径涉及细胞色素 P450 和短链脱氢酶。
Proc Natl Acad Sci U S A. 2021 Dec 28;118(52). doi: 10.1073/pnas.2110092118.
8
De novo variants in H3-3A and H3-3B are associated with neurodevelopmental delay, dysmorphic features, and structural brain abnormalities.H3-3A和H3-3B中的新生变异与神经发育迟缓、畸形特征和脑结构异常有关。
NPJ Genom Med. 2021 Dec 7;6(1):104. doi: 10.1038/s41525-021-00268-8.
9
Distinct histone H3-H4 binding modes of sNASP reveal the basis for cooperation and competition of histone chaperones.sNASP 独特的组蛋白 H3-H4 结合模式揭示了组蛋白伴侣协同与竞争的基础。
Genes Dev. 2021 Dec 1;35(23-24):1610-1624. doi: 10.1101/gad.349100.121. Epub 2021 Nov 24.
10
HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics.HP1α 是一种染色质交联剂,可控制核和有丝分裂染色体力学。
Elife. 2021 Jun 9;10:e63972. doi: 10.7554/eLife.63972.