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囊泡内转录-翻译机器捕获与浓缩的实验及数值模拟

Experiments on and Numerical Modeling of the Capture and Concentration of Transcription-Translation Machinery inside Vesicles.

作者信息

Mavelli Fabio, Stano Pasquale

机构信息

University of Bari.

Roma Tre University.

出版信息

Artif Life. 2015 Fall;21(4):445-63. doi: 10.1162/ARTL_a_00187. Epub 2015 Nov 6.

DOI:10.1162/ARTL_a_00187
PMID:26545162
Abstract

Synthetic or semi-synthetic minimal cells are those cell-like artificial compartments that are based on the encapsulation of molecules inside lipid vesicles (liposomes). Synthetic cells are currently used as primitive cell models and are very promising tools for future biotechnology. Despite the recent experimental advancements and sophistication reached in this field, the complete elucidation of many fundamental physical aspects still poses experimental and theoretical challenges. The interplay between solute capture and vesicle formation is one of the most intriguing ones. In a series of studies, we have reported that when vesicles spontaneously form in a dilute solution of proteins, ribosomes, or ribo-peptidic complexes, then, contrary to statistical predictions, it is possible to find a small fraction of liposomes (<1%) that contain a very large number of solutes, so that their local (intravesicular) concentrations largely exceed the expected value. More recently, we have demonstrated that this effect (spontaneous crowding) operates also on multimolecular mixtures, and can drive the synthesis of proteins inside vesicles, whereas the same reaction does not proceed at a measurable rate in the external bulk phase. Here we firstly introduce and discuss these already published observations. Then, we present a computational investigation of the encapsulation of transcription-translation (TX-TL) machinery inside vesicles, based on a minimal protein synthesis model and on different solute partition functions. Results show that experimental data are compatible with an entrapment model that follows a power law rather than a Gaussian distribution. The results are discussed from the viewpoint of origin of life, highlighting open questions and possible future research directions.

摘要

合成或半合成的最小细胞是基于脂质囊泡(脂质体)内分子封装的类细胞人工隔室。合成细胞目前被用作原始细胞模型,是未来生物技术非常有前景的工具。尽管该领域最近在实验上取得了进展并变得更加复杂,但许多基本物理方面的完整阐明仍然带来实验和理论上的挑战。溶质捕获与囊泡形成之间的相互作用是最引人入胜的相互作用之一。在一系列研究中,我们报告称,当囊泡在蛋白质、核糖体或核糖肽复合物的稀溶液中自发形成时,与统计预测相反,有可能发现一小部分脂质体(<1%)含有大量溶质,以至于它们的局部(囊泡内)浓度大大超过预期值。最近,我们证明了这种效应(自发聚集)也作用于多分子混合物,并能驱动囊泡内蛋白质的合成,而相同的反应在外部本体相中不会以可测量的速率进行。在这里,我们首先介绍并讨论这些已发表的观察结果。然后,我们基于最小蛋白质合成模型和不同的溶质分配函数,对转录 - 翻译(TX - TL)机制在囊泡内的封装进行了计算研究。结果表明,实验数据与遵循幂律而非高斯分布的捕获模型兼容。从生命起源的角度对结果进行了讨论,突出了未解决的问题和可能的未来研究方向。

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