Kashid Somnath M, Jin Geun Young, Bagchi Sayan, Kim Yung Sam
Physical and Materials Chemistry Division-CSIR, National Chemical Laboratory , Dr. Homi Bhabha Road, Pashan, Pune 411008, India.
Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) , 50 UNIST-gil, Ulsan 44919, Korea.
J Phys Chem B. 2015 Dec 10;119(49):15334-43. doi: 10.1021/acs.jpcb.5b08643. Epub 2015 Nov 24.
Cosolvents strongly influence the solute-solvent interactions of biomolecules in aqueous environments and have profound effects on the stability and activity of several proteins and enzymes. Experimental studies have previously reported on the hydrogen-bond dynamics of water molecules in the presence of a cosolvent, but understanding the effects from a solute's perspective could provide greater insight into protein stability. Because carbonyl groups are abundant in biomolecules, the current study used 2D IR spectroscopy and molecular dynamics simulations to compare the hydrogen-bond dynamics of the solute's carbonyl group in aqueous solution, with and without the presence of DMSO as a cosolvent. 2D IR spectroscopy was used to quantitatively estimate the time scales of the hydrogen-bond dynamics of the carbonyl group in neat water and 1:1 DMSO/water solution. The 2D IR results show spectral signatures of a chemical exchange process: The presence of the cosolvent was found to lower the hydrogen-bond exchange rate by a factor of 5. The measured exchange rates were 7.50 × 10(11) and 1.48 × 10(11) s(-1) in neat water and 1:1 DMSO/water, respectively. Molecular dynamics simulations predict a significantly shorter carbonyl hydrogen-bond lifetime in neat water than in 1:1 DMSO/water and provide molecular insights into the exchange mechanism. The binding of the cosolvent to the solute was found to be accompanied by the release of hydrogen-bonded water molecules to the bulk. The widely different hydrogen-bond lifetimes and exchange rates with and without DMSO indicate a significant change in the ultrafast hydrogen-bond dynamics in the presence of a cosolvent, which, in turn, might play an important role in the stability and activity of biomolecules.
助溶剂会强烈影响生物分子在水性环境中的溶质 - 溶剂相互作用,并对多种蛋白质和酶的稳定性及活性产生深远影响。此前已有实验研究报道了在助溶剂存在下水分子的氢键动力学,但从溶质角度理解这些影响能为蛋白质稳定性提供更深入的见解。由于羰基在生物分子中大量存在,当前研究使用二维红外光谱和分子动力学模拟,比较了在有无二甲基亚砜(DMSO)作为助溶剂的情况下,溶质羰基在水溶液中的氢键动力学。二维红外光谱用于定量估计纯水中以及1:1 DMSO/水溶液中羰基氢键动力学的时间尺度。二维红外光谱结果显示了一个化学交换过程的光谱特征:发现助溶剂的存在使氢键交换速率降低了5倍。在纯水中和1:1 DMSO/水中测得的交换速率分别为7.50×10¹¹和1.48×10¹¹ s⁻¹。分子动力学模拟预测,纯水中羰基氢键的寿命比1:1 DMSO/水中的显著更短,并为交换机制提供了分子层面的见解。发现助溶剂与溶质的结合伴随着氢键结合的水分子释放到本体相中。有无DMSO时氢键寿命和交换速率的巨大差异表明,在助溶剂存在下超快氢键动力学发生了显著变化,这反过来可能在生物分子的稳定性和活性中发挥重要作用。