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为多发性硬化症患者设计和开发基于影像信息学的多民族电子文件夹系统。

Design and development of an ethnically-diverse imaging informatics-based eFolder system for multiple sclerosis patients.

作者信息

Ma Kevin C, Fernandez James R, Amezcua Lilyana, Lerner Alex, Shiroishi Mark S, Liu Brent J

机构信息

IPILab, Dept. of Biomedical Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA 90089-1111, United States.

Dept. of Radiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-1111, United States.

出版信息

Comput Med Imaging Graph. 2015 Dec;46 Pt 2(Pt 2):257-68. doi: 10.1016/j.compmedimag.2015.09.007. Epub 2015 Oct 23.

DOI:10.1016/j.compmedimag.2015.09.007
PMID:26564667
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4936902/
Abstract

PURPOSE

MRI has been used to identify multiple sclerosis (MS) lesions in brain and spinal cord visually. Integrating patient information into an electronic patient record system has become key for modern patient care in medicine in recent years. Clinically, it is also necessary to track patients' progress in longitudinal studies, in order to provide comprehensive understanding of disease progression and response to treatment. As the amount of required data increases, there exists a need for an efficient systematic solution to store and analyze MS patient data, disease profiles, and disease tracking for both clinical and research purposes.

METHOD

An imaging informatics based system, called MS eFolder, has been developed as an integrated patient record system for data storage and analysis of MS patients. The eFolder system, with a DICOM-based database, includes a module for lesion contouring by radiologists, a MS lesion quantification tool to quantify MS lesion volume in 3D, brain parenchyma fraction analysis, and provide quantitative analysis and tracking of volume changes in longitudinal studies. Patient data, including MR images, have been collected retrospectively at University of Southern California Medical Center (USC) and Los Angeles County Hospital (LAC). The MS eFolder utilizes web-based components, such as browser-based graphical user interface (GUI) and web-based database. The eFolder database stores patient clinical data (demographics, MS disease history, family history, etc.), MR imaging-related data found in DICOM headers, and lesion quantification results. Lesion quantification results are derived from radiologists' contours on brain MRI studies and quantified into 3-dimensional volumes and locations. Quantified results of white matter lesions are integrated into a structured report based on DICOM-SR protocol and templates. The user interface displays patient clinical information, original MR images, and viewing structured reports of quantified results. The GUI also includes a data mining tool to handle unique search queries for MS. System workflow and dataflow steps has been designed based on the IHE post-processing workflow profile, including workflow process tracking, MS lesion contouring and quantification of MR images at a post-processing workstation, and storage of quantitative results as DICOM-SR in DICOM-based storage system. The web-based GUI is designed to display zero-footprint DICOM web-accessible data objects (WADO) and the SR objects.

SUMMARY

The MS eFolder system has been designed and developed as an integrated data storage and mining solution in both clinical and research environments, while providing unique features, such as quantitative lesion analysis and disease tracking over a longitudinal study. A comprehensive image and clinical data integrated database provided by MS eFolder provides a platform for treatment assessment, outcomes analysis and decision-support. The proposed system serves as a platform for future quantitative analysis derived automatically from CAD algorithms that can also be integrated within the system for individual disease tracking and future MS-related research. Ultimately the eFolder provides a decision-support infrastructure that can eventually be used as add-on value to the overall electronic medical record.

摘要

目的

磁共振成像(MRI)已被用于在视觉上识别脑和脊髓中的多发性硬化症(MS)病变。近年来,将患者信息整合到电子病历系统已成为现代医学患者护理的关键。临床上,在纵向研究中跟踪患者的病情进展也很有必要,以便全面了解疾病进展和对治疗的反应。随着所需数据量的增加,需要一种高效的系统解决方案来存储和分析MS患者数据、疾病概况以及用于临床和研究目的的疾病跟踪。

方法

已开发出一种基于成像信息学的系统,称为MS电子文件夹,作为用于存储和分析MS患者数据的集成病历系统。该电子文件夹系统具有基于DICOM的数据库,包括一个供放射科医生进行病变轮廓描绘的模块、一个用于在三维空间中量化MS病变体积的MS病变量化工具、脑实质分数分析,并在纵向研究中提供体积变化的定量分析和跟踪。患者数据,包括MR图像,已在南加州大学医学中心(USC)和洛杉矶县医院(LAC)进行了回顾性收集。MS电子文件夹利用基于网络的组件,如基于浏览器的图形用户界面(GUI)和基于网络的数据库。电子文件夹数据库存储患者临床数据(人口统计学、MS疾病史、家族史等)、在DICOM头文件中发现的与MR成像相关的数据以及病变量化结果。病变量化结果源自放射科医生在脑部MRI研究上的轮廓,并被量化为三维体积和位置。白质病变的量化结果基于DICOM-SR协议和模板被整合到一份结构化报告中。用户界面显示患者临床信息、原始MR图像以及查看量化结果的结构化报告。GUI还包括一个数据挖掘工具,用于处理针对MS的独特搜索查询。系统工作流程和数据流步骤已基于IHE后处理工作流程规范进行设计,包括工作流程跟踪、在一个后处理工作站对MR图像进行MS病变轮廓描绘和量化,以及将定量结果作为DICOM-SR存储在基于DICOM的存储系统中。基于网络的GUI旨在显示零占用空间的可通过网络访问的DICOM数据对象(WADO)和SR对象。

总结

MS电子文件夹系统已被设计和开发为一种在临床和研究环境中进行集成数据存储和挖掘的解决方案,同时提供独特功能,如在纵向研究中的定量病变分析和疾病跟踪。MS电子文件夹提供的综合图像和临床数据集成数据库为治疗评估、结果分析和决策支持提供了一个平台。所提议的系统作为一个平台,用于未来从CAD算法自动派生的定量分析,这些算法也可集成到系统中用于个体疾病跟踪和未来与MS相关的研究。最终,电子文件夹提供了一个决策支持基础设施,最终可作为整体电子病历的附加价值。

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