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噪声化学网络中的耗散:亏度的作用。

Dissipation in noisy chemical networks: The role of deficiency.

作者信息

Polettini M, Wachtel A, Esposito M

机构信息

Complex Systems and Statistical Mechanics, Physics and Materials Science Research Unit, University of Luxembourg, 162a Avenue de la Faïencerie, Luxembourg L-1511, Luxembourg.

出版信息

J Chem Phys. 2015 Nov 14;143(18):184103. doi: 10.1063/1.4935064.

Abstract

We study the effect of intrinsic noise on the thermodynamic balance of complex chemical networks subtending cellular metabolism and gene regulation. A topological network property called deficiency, known to determine the possibility of complex behavior such as multistability and oscillations, is shown to also characterize the entropic balance. In particular, when deficiency is zero the average stochastic dissipation rate equals that of the corresponding deterministic model, where correlations are disregarded. In fact, dissipation can be reduced by the effect of noise, as occurs in a toy model of metabolism that we employ to illustrate our findings. This phenomenon highlights that there is a close interplay between deficiency and the activation of new dissipative pathways at low molecule numbers.

摘要

我们研究了内禀噪声对构成细胞代谢和基因调控的复杂化学网络热力学平衡的影响。一种被称为缺陷的拓扑网络性质,已知其可决定诸如多稳态和振荡等复杂行为的可能性,研究表明它也能表征熵平衡。特别地,当缺陷为零时,平均随机耗散率等于相应确定性模型(其中相关性被忽略)的耗散率。事实上,正如我们用于阐述研究结果的一个代谢玩具模型中所发生的那样,噪声效应可以降低耗散。这一现象突出表明,在低分子数情况下,缺陷与新耗散途径的激活之间存在密切的相互作用。

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