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模拟灾难、交叉和katanin介导的切断在植物皮层微管自组织中的作用。

Modelling the role of catastrophe, crossover and katanin-mediated severing in the self-organisation of plant cortical microtubules.

作者信息

Mace Alex, Wang Wenjia

机构信息

School of Computing Sciences, University of East Anglia, Norwich, Norfolk NR4 7TJ, UK.

出版信息

IET Syst Biol. 2015 Dec;9(6):277-84. doi: 10.1049/iet-syb.2015.0022.

Abstract

Plant cortical microtubules can form ordered arrays through interactions among themselves. When an incident microtubule collides with a barrier microtubule it may entrain if below a certain angle. Else it undergoes collision induced catastrophe (CIC) or crosses over the barrier microtubule. It has been proposed that katanin is necessary to create order by severing these crossover sites. The authors present a three-state computational model using Arabidopsis thaliana data to show how spontaneous catastrophe, the probability of CIC versus crossover, and katanin-mediated severing at the crossover sites affect microtubule ordering. The results of the systematic simulations show that (1), the microtubule order is more sensitive to the catastrophe rate than the rescue rate; (2), at 21°C, peak order is observed at 0.3 CIC and order decreases as CIC increases; and (3) at 0.2 CIC, katanin severing acting uniformly at all crossover sites is able to create order within a biologically reasonable time frame, but at lower CICs this becomes unrealistically fast. This would imply that at lower CIC levels preferential crossover site targeting and severing activity regulators would be required for katanin to bring about order.

摘要

植物皮层微管可通过自身间的相互作用形成有序阵列。当一条入射微管与一条屏障微管碰撞时,如果角度低于一定值,它可能会被带动。否则,它会经历碰撞诱导的灾变(CIC)或越过屏障微管。有人提出,katanin对于通过切断这些交叉位点来创造秩序是必要的。作者提出了一个使用拟南芥数据的三态计算模型,以展示自发灾变、CIC与交叉的概率以及katanin介导的交叉位点切断如何影响微管排序。系统模拟的结果表明:(1),微管排序对灾变速率比对拯救速率更敏感;(2),在21°C时,在0.3的CIC下观察到峰值排序,且随着CIC增加排序降低;(3),在0.2的CIC下,katanin在所有交叉位点均匀地切断能够在生物学上合理的时间范围内创造秩序,但在较低的CIC下,这会变得不切实际地快。这意味着在较低的CIC水平下,katanin要实现排序需要优先针对交叉位点的靶向和切断活性调节剂。

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Model for the orientational ordering of the plant microtubule cortical array.植物微管皮层阵列取向排序模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jul;82(1 Pt 1):011911. doi: 10.1103/PhysRevE.82.011911. Epub 2010 Jul 19.

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