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使用多基因检测面板鉴定韩国肌萎缩侧索硬化症患者的突变

Identification of mutations in Korean patients with amyotrophic lateral sclerosis using multigene panel testing.

作者信息

Kim Hee-Jung, Oh Ki-Wook, Kwon Min-Jung, Oh Seong-Il, Park Jin-Seok, Kim Young-Eun, Choi Byung-Ok, Lee Seungbok, Ki Chang-Seok, Kim Seung Hyun

机构信息

Department of Laboratory Medicine, Green Cross Laboratories, Yongin-si, Gyeonggi-do, Korea.

Department of Neurology, Hanyang University College of Medicine, Seoul, Korea; Cell Therapy Center, Hanyang University Hospital, Seoul, Korea.

出版信息

Neurobiol Aging. 2016 Jan;37:209.e9-209.e16. doi: 10.1016/j.neurobiolaging.2015.09.012. Epub 2015 Sep 30.

Abstract

Amyotrophic lateral sclerosis (ALS) is a rapidly progressive neurodegenerative disease involving motor neurons. Because a growing number of genes have been identified as the genetic etiology of ALS, simultaneous screening of mutations in multiple genes is likely to be more efficient than gene-by-gene testing. In this study, we performed a multigene panel testing by using targeted capture of 18 ALS-related genes followed by next-generation sequencing. Using this technique, we tried to identify mutations in 4 index patients with familial ALS and 148 sporadic ALS in Korean population and identified 4 known mutations in SOD1, ALS2, MAPT, and SQSTM1 genes, respectively, and 28 variants of uncertain significance in 9 genes. Among the 28 variants of uncertain significance, 6 missense variants were found in highly conserved residues and were consistently predicted to be deleterious by in silico analyses. These results suggest that multigene panel testing is an effective approach for mutation screening in ALS-related genes. Moreover, the relatively low frequency of mutations in known ALS genes implies marked genetic heterogeneity at least in Korean patients with ALS.

摘要

肌萎缩侧索硬化症(ALS)是一种累及运动神经元的快速进展性神经退行性疾病。由于越来越多的基因已被确定为ALS的遗传病因,同时筛查多个基因中的突变可能比逐个基因检测更有效。在本研究中,我们通过对18个与ALS相关的基因进行靶向捕获,随后进行下一代测序,开展了多基因panel检测。利用该技术,我们试图在韩国人群中鉴定4例家族性ALS索引患者和148例散发性ALS患者中的突变,分别在SOD1、ALS2、MAPT和SQSTM1基因中鉴定出4个已知突变,以及在9个基因中鉴定出28个意义未明的变异。在这28个意义未明的变异中,在高度保守残基中发现了6个错义变异,并且通过计算机分析一致预测为有害变异。这些结果表明,多基因panel检测是ALS相关基因突变筛查的有效方法。此外,已知ALS基因中相对较低的突变频率意味着至少在韩国ALS患者中存在明显的遗传异质性。

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