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核磁共振光谱中溶剂效应的计算分析

Computational Analysis of Solvent Effects in NMR Spectroscopy.

作者信息

Dračínský Martin, Bouř Petr

机构信息

Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo nám. 2, 166 10 Prague, Czech Republic.

出版信息

J Chem Theory Comput. 2010 Jan 12;6(1):288-99. doi: 10.1021/ct900498b. Epub 2009 Nov 23.

Abstract

Solvent modeling became a standard part of first principles computations of molecular properties. However, a universal solvent approach is particularly difficult for the nuclear magnetic resonance (NMR) shielding and spin-spin coupling constants that in part result from collective delocalized properties of the solute and the environment. In this work, bulk and specific solvent effects are discussed on experimental and theoretical model systems comprising solvated alanine zwitterion and chloroform molecules. Density functional theory computations performed on larger clusters indicate that standard dielectric continuum solvent models may not be sufficiently accurate. In some cases, more reasonable NMR parameters were obtained by approximation of the solvent with partial atomic charges. Combined cluster/continuum models yielded the most reasonable values of the spectroscopic parameters, provided that they are dynamically averaged. The roles of solvent polarizability, solvent shell structure, and bulk permeability were investigated. NMR shielding values caused by the macroscopic solvent magnetizability exhibited the slowest convergence with respect to the cluster size. For practical computations, however, inclusion of the first solvation sphere provided satisfactory corrections of the vacuum values. The simulations of chloroform chemical shifts and CH J-coupling constants were found to be very sensitive to the molecular dynamics model used to generate the cluster geometries. The results show that computationally efficient solvent modeling is possible and can reveal fine details of molecular structure, solvation, and dynamics.

摘要

溶剂建模已成为分子性质第一性原理计算的标准组成部分。然而,对于核磁共振(NMR)屏蔽和自旋 - 自旋耦合常数而言,一种通用的溶剂方法尤其困难,因为这些常数部分源于溶质和环境的集体离域性质。在这项工作中,我们讨论了包含溶剂化丙氨酸两性离子和氯仿分子的实验和理论模型体系中的整体和特定溶剂效应。对更大的团簇进行的密度泛函理论计算表明,标准的介电连续介质溶剂模型可能不够准确。在某些情况下,通过用部分原子电荷近似溶剂可获得更合理的NMR参数。联合团簇/连续介质模型给出了最合理的光谱参数值,前提是对它们进行动态平均。研究了溶剂极化率、溶剂壳层结构和整体渗透率的作用。由宏观溶剂磁化率引起的NMR屏蔽值相对于团簇大小收敛最慢。然而,对于实际计算,包含第一溶剂化层能对真空值提供令人满意的校正。发现氯仿化学位移和CH J耦合常数的模拟对用于生成团簇几何结构的分子动力学模型非常敏感。结果表明,高效的计算溶剂建模是可行的,并且可以揭示分子结构、溶剂化和动力学的精细细节。

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