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苯二聚体:从头算 DFT-D 分子动力学模拟中获得的动态结构和热力学。

Benzene Dimer: Dynamic Structure and Thermodynamics Derived from On-the-Fly ab initio DFT-D Molecular Dynamic Simulations.

机构信息

Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic.

出版信息

J Chem Theory Comput. 2008 Nov 11;4(11):1835-40. doi: 10.1021/ct8002282.

Abstract

The dynamic nature of the benzene dimer was explored by on-the-fly molecular dynamics simulations based on the DFT-D method covering the dispersion energy. An all-electron DFT was performed at the BLYP/TZVP level. The parameters in the dispersion correction term were fitted to mimic the benchmark CCSD(T)/complete basis set limit potential energy curves for both the parallel-displaced (PD) and T-shaped (TS) structures of the dimer exactly. A dynamic description is important at temperatures above 10 K, where interconversion between the TS and PD structures is possible and a mixture of these two species exists. The higher the temperature, the more dominant the TS structure because of a favorable entropic contribution to the free energy. An analysis of the TS structures revealed that the symmetric c2v structure, a low-lying transition state, is practically not populated and that the tilted cs TS structure is prevalent. This finding is in perfect agreement with infrared spectroscopy.

摘要

通过基于包含色散能的 DFT-D 方法的实时分子动力学模拟,研究了苯二聚体的动态特性。在 BLYP/TZVP 水平上进行了全电子 DFT 计算。在色散校正项中的参数进行了拟合,以模拟苯二聚体的平行位移(PD)和 T 形(TS)结构的基准 CCSD(T)/完全基组极限势能曲线。在高于 10 K 的温度下,动态描述是很重要的,因为在这个温度下,TS 和 PD 结构之间可能发生相互转化,并且存在这两种物质的混合物。温度越高,TS 结构越占主导地位,因为它对自由能有有利的熵贡献。对 TS 结构的分析表明,对称的 c2v 结构,即低能过渡态,实际上没有被占据,而倾斜的 cs TS 结构更为普遍。这一发现与红外光谱完全一致。

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