Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic.
J Chem Theory Comput. 2008 Nov 11;4(11):1835-40. doi: 10.1021/ct8002282.
The dynamic nature of the benzene dimer was explored by on-the-fly molecular dynamics simulations based on the DFT-D method covering the dispersion energy. An all-electron DFT was performed at the BLYP/TZVP level. The parameters in the dispersion correction term were fitted to mimic the benchmark CCSD(T)/complete basis set limit potential energy curves for both the parallel-displaced (PD) and T-shaped (TS) structures of the dimer exactly. A dynamic description is important at temperatures above 10 K, where interconversion between the TS and PD structures is possible and a mixture of these two species exists. The higher the temperature, the more dominant the TS structure because of a favorable entropic contribution to the free energy. An analysis of the TS structures revealed that the symmetric c2v structure, a low-lying transition state, is practically not populated and that the tilted cs TS structure is prevalent. This finding is in perfect agreement with infrared spectroscopy.
通过基于包含色散能的 DFT-D 方法的实时分子动力学模拟,研究了苯二聚体的动态特性。在 BLYP/TZVP 水平上进行了全电子 DFT 计算。在色散校正项中的参数进行了拟合,以模拟苯二聚体的平行位移(PD)和 T 形(TS)结构的基准 CCSD(T)/完全基组极限势能曲线。在高于 10 K 的温度下,动态描述是很重要的,因为在这个温度下,TS 和 PD 结构之间可能发生相互转化,并且存在这两种物质的混合物。温度越高,TS 结构越占主导地位,因为它对自由能有有利的熵贡献。对 TS 结构的分析表明,对称的 c2v 结构,即低能过渡态,实际上没有被占据,而倾斜的 cs TS 结构更为普遍。这一发现与红外光谱完全一致。