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氢键对吡啶分子间边对面相互作用的影响。

Influence of hydrogen bonds on edge-to-face interactions between pyridine molecules.

作者信息

Andrić Jelena M, Antonijević Ivana S, Janjić Goran V, Zarić Snežana D

机构信息

Innovation Center of the Faculty of Chemistry, Studentski trg 12-16, Belgrade, Serbia.

Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Njegoševa 12, Belgrade, Serbia.

出版信息

J Mol Model. 2018 Feb 20;24(3):60. doi: 10.1007/s00894-017-3570-y.

Abstract

Edge-to-face interactions between two pyridine molecules and the influence of simultaneous hydrogen bonding of one or both of the pyridines to water on those interactions were studied by analyzing data from ab initio calculations. The results show that the edge-to-face interactions of pyridine dimers that are hydrogen bonded to water are generally stronger than those of non-H-bonded pyridine dimers, especially when the donor pyridine forms a hydrogen bond. The binding energy of the most stable edge-to-face interacting H-bonded pyridine dimer is -5.05 kcal/mol, while that for the most stable edge-to-face interacting non-H-bonded pyridine dimer is -3.64 kcal/mol. The interaction energy data obtained in this study cannot be explained solely by the differences in electrostatic potential between pyridine and the pyridine-water dimer. However, the calculated cooperative effect can be predicted using electrostatic potential maps.

摘要

通过分析从头算计算数据,研究了两个吡啶分子之间的边对面相互作用,以及一个或两个吡啶与水同时形成氢键对这些相互作用的影响。结果表明,与水形成氢键的吡啶二聚体的边对面相互作用通常比未形成氢键的吡啶二聚体更强,特别是当供体吡啶形成氢键时。最稳定的边对面相互作用的氢键吡啶二聚体的结合能为-5.05千卡/摩尔,而最稳定的边对面相互作用的未形成氢键的吡啶二聚体的结合能为-3.64千卡/摩尔。本研究获得的相互作用能数据不能仅用吡啶与吡啶-水二聚体之间静电势的差异来解释。然而,计算得到的协同效应可以使用静电势图来预测。

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