Verma Priyanka, Anjum Shahin, Khan Shamshad Ahmad, Roy Sudeep, Odstrcilik Jan, Mathur Ajay Kumar
Department of Plant Biotechnology, Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP) Council of Scientific and Industrial Research PO-CIMAP, Lucknow, 226015, India.
IIDS Center of Bioinformatics, Nehru Science Center, University of Allahabad, Allahabad, 211001, India.
Appl Biochem Biotechnol. 2016 Mar;178(6):1154-66. doi: 10.1007/s12010-015-1935-1. Epub 2015 Dec 3.
Artificial neural network based modeling is a generic approach to understand and correlate different complex parameters of biological systems for improving the desired output. In addition, some new inferences can also be predicted in a shorter time with less cost and labor. As terpenoid indole alkaloid pathway in Vinca minor is very less investigated or elucidated, a strategy of elicitation with hydroxylase and acetyltransferase along with incorporation of various precursors from primary shikimate and secoiridoid pools via simultaneous employment of cyclooxygenase inhibitor was performed in the hairy roots of V. minor. This led to the increment in biomass accumulation, total alkaloid concentration, and vincamine production in selected treatments. The resultant experimental values were correlated with algorithm approaches of artificial neural network that assisted in finding the yield of vincamine, alkaloids, and growth kinetics using number of elicits. The inputs were the hydroxylase/acetyltransferase elicitors and cyclooxygenase inhibitor along with various precursors from shikimate and secoiridoid pools and the outputs were growth index (GI), alkaloids, and vincamine. The approach incorporates two MATLAB codes; GRNN and FFBPNN. Growth kinetic studies revealed that shikimate and tryptophan supplementation triggers biomass accumulation (GI = 440.2 to 540.5); while maximum alkaloid (3.7 % dry wt.) and vincamine production (0.017 ± 0.001 % dry wt.) was obtained on supplementation of secologanin along with tryptophan, naproxen, hydrogen peroxide, and acetic anhydride. The study shows that experimental and predicted values strongly correlate each other. The correlation coefficient for growth index (GI), alkaloids, and vincamine was found to be 0.9997, 0.9980, 0.9511 in GRNN and 0.9725, 0.9444, 0.9422 in FFBPNN, respectively. GRNN provided greater similarity between the target and predicted dataset in comparison to FFBPNN. The findings can provide future insights to calculate growth index, alkaloids, and vincamine in combination to different elicits.
基于人工神经网络的建模是一种通用方法,用于理解生物系统的不同复杂参数并建立它们之间的关联,以改善预期输出。此外,还可以在更短的时间内,以更低的成本和人力预测一些新的推断。由于对小蔓长春花中萜类吲哚生物碱途径的研究或阐释非常少,因此在小蔓长春花的毛状根中实施了一种策略,即利用羟化酶和乙酰转移酶进行诱导,并通过同时使用环氧化酶抑制剂,从莽草酸和裂环环烯醚萜库中引入各种前体。这导致了所选处理中生物量积累、总生物碱浓度和长春胺产量的增加。所得实验值与人工神经网络的算法方法相关联,该方法有助于利用诱导剂的数量来确定长春胺、生物碱的产量以及生长动力学。输入为羟化酶/乙酰转移酶诱导剂、环氧化酶抑制剂以及来自莽草酸和裂环环烯醚萜库的各种前体,输出为生长指数(GI)、生物碱和长春胺。该方法包含两个MATLAB代码:广义回归神经网络(GRNN)和前馈反向传播神经网络(FFBPNN)。生长动力学研究表明,补充莽草酸和色氨酸会触发生物量积累(GI = 440.2至540.5);而在补充裂环马钱苷以及色氨酸、萘普生、过氧化氢和乙酸酐时,可获得最大生物碱产量(3.7%干重)和长春胺产量(0.017±0.001%干重)。研究表明,实验值和预测值之间具有很强的相关性。在广义回归神经网络中,生长指数(GI)、生物碱和长春胺的相关系数分别为0.9997、0.9980、0.9511;在前馈反向传播神经网络中,相关系数分别为0.9725、0.9444、0.9422。与前馈反向传播神经网络相比,广义回归神经网络在目标数据集和预测数据集之间提供了更高的相似度。这些发现可为结合不同诱导剂计算生长指数、生物碱和长春胺提供未来的见解。