Aguado Brian A, Wu Jia J, Azarin Samira M, Nanavati Dhaval, Rao Shreyas S, Bushnell Grace G, Medicherla Chaitanya B, Shea Lonnie D
Department of Biomedical Engineering, Northwestern University, Evanston, IL 60208, USA.
Simpson Querrey Institute for Bionanotechnology, Northwestern University, Chicago, IL 60611, USA.
Sci Rep. 2015 Dec 4;5:17566. doi: 10.1038/srep17566.
Metastatic cell homing is a complex process mediated in part by diffusible factors secreted from immune cells found at a pre-metastatic niche. We report on connecting secretomics and TRanscriptional Activity CEll aRray (TRACER) data to identify functional paracrine interactions between immune cells and metastatic cells as novel mediators of homing. Metastatic breast cancer mouse models were used to generate a diseased splenocyte conditioned media (D-SCM) containing immune cell secreted factors. MDA-MB-231 metastatic cell activity including cell invasion, migration, transendothelial migration, and proliferation were increased in D-SCM relative to control media. Our D-SCM secretome analysis yielded 144 secreted factor candidates that contribute to increased metastatic cell activity. The functional mediators of homing were identified using MetaCore software to determine interactions between the immune cell secretome and the TRACER-identified active transcription factors within metastatic cells. Among the 5 candidate homing factors identified, haptoglobin was selected and validated in vitro and in vivo as a key mediator of homing. Our studies demonstrate a novel systems biology approach to identify functional signaling factors associated with a cellular phenotype, which provides an enabling tool that complements large-scale protein identification provided by proteomics.
转移细胞归巢是一个复杂的过程,部分由位于转移前生态位的免疫细胞分泌的可扩散因子介导。我们报告了将分泌蛋白质组学和转录活性细胞阵列(TRACER)数据相结合,以确定免疫细胞和转移细胞之间的功能性旁分泌相互作用,作为归巢的新型介质。利用转移性乳腺癌小鼠模型生成含有免疫细胞分泌因子的患病脾细胞条件培养基(D-SCM)。与对照培养基相比,D-SCM中MDA-MB-231转移细胞的活性,包括细胞侵袭、迁移、跨内皮迁移和增殖均增加。我们对D-SCM的分泌蛋白质组分析产生了144种有助于增加转移细胞活性的分泌因子候选物。使用MetaCore软件确定免疫细胞分泌蛋白质组与转移细胞内TRACER鉴定的活性转录因子之间的相互作用,从而鉴定归巢的功能介质。在鉴定出的5种候选归巢因子中,选择触珠蛋白并在体外和体内验证其为归巢的关键介质。我们的研究展示了一种新的系统生物学方法来鉴定与细胞表型相关的功能性信号因子,这提供了一种补充蛋白质组学提供的大规模蛋白质鉴定的有力工具。