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非均质子导线的势能函数。绿色荧光蛋白中质子导线的基态和光活性态。

A Potential Energy Function for Heterogeneous Proton-Wires. Ground and Photoactive States of the Proton-Wire in the Green Fluorescent Protein.

作者信息

Vendrell Oriol, Gelabert Ricard, Moreno Miquel, Lluch José M

机构信息

Departament de Química and Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain.

Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany.

出版信息

J Chem Theory Comput. 2008 Jul;4(7):1138-50. doi: 10.1021/ct800075w.

DOI:10.1021/ct800075w
PMID:26636367
Abstract

In this paper an EVB-based method to describe the energetics of operation of arbitrary-length heterogeneous proton-wires is described. The method keeps the number of fittable parameters low by exploiting the idea of "protonation states". The method is applied to describe the 3-proton proton-wire described in Green Fluorescent Protein (GFP), and two sets of parameters have been obtained, one for the electronic ground state and another for the photoactive excited electronic state, of a chemical model including the groups supporting the proton-wire and based on CASPT2//CASSCF quality reference energies. The fitted EVB functions are analyzed in static terms. In this way, it is seen that only a minimum exists in S0 while two exist in S1: one for the photoproduct and one for the reactant in the excited state, even though consideration of the Franck-Condon excitation energy predicts an effective barrier under 1 kcal mol(-1). Topological analysis of the transition state structure reveals a concerted but asynchronous motion of the protons, where the chromophore's proton lags behind, and the final proton of the wire that goes from Ser205 to Glu222 leads the process. Inclusion of nuclear dynamic efects causes this small effective barrier to vanish and predicts an essentially barrierless process in the excited state.

摘要

本文描述了一种基于经验价键(EVB)的方法,用于描述任意长度的异质质子线的运行能量学。该方法通过利用“质子化状态”的概念,使可拟合参数的数量保持在较低水平。该方法被应用于描述绿色荧光蛋白(GFP)中所述的三质子质子线,并基于包含支持质子线的基团且以CASPT2//CASSCF质量参考能量为基础的化学模型,获得了两组参数,一组用于电子基态,另一组用于光活性激发电子态。对拟合的EVB函数进行了静态分析。通过这种方式可以看出,在S0中仅存在一个最小值,而在S1中存在两个最小值:一个用于光产物,一个用于激发态的反应物,尽管考虑弗兰克-康登激发能预测有效势垒低于1千卡摩尔-1。对过渡态结构的拓扑分析揭示了质子的协同但异步运动,其中发色团的质子滞后,而从Ser205到Glu222的质子线的最后一个质子引领该过程。包含核动力学效应会导致这个小的有效势垒消失,并预测在激发态下基本上是无势垒的过程。

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The mechanism of a green fluorescent protein proton shuttle unveiled in the time-resolved frequency domain by excited state dynamics.通过激发态动力学在时间分辨频域中揭示的绿色荧光蛋白质质子穿梭机制。
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