Zhao Zhenzhen, Peng Wu, Hu Xuejiao, Zhang Jingya, Shang Mengqiao, Zhou Juan, Zhou Yi, Song Xingbo, Lu Xiaojun, Ying Binwu, Chen Xuerong
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, PR China.
Division of Pulmonary Disease, Department of Respiratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, PR China.
Infect Genet Evol. 2016 Jan;37:259-65. doi: 10.1016/j.meegid.2015.11.031. Epub 2015 Nov 28.
SFRP1 acts as a well-established inhibitory regulator of the Wnt signaling pathway, whose polymorphisms have been demonstrated to be associated with the risk of inflammation, infection as well as cancer. We verified the hypothesis that single nucleotide polymorphisms (SNPs) within SFRP1 gene are associated with susceptibility and clinical characteristics of tuberculosis disease in a Chinese Han population.
Six candidate SNPs were genotyped using MassARRAY method in a case-control design (260 tuberculosis patients and 252 healthy controls). A comprehensive analysis of single locus including the genotypic, allelic frequencies and the genetic models, haplotypic construction as well as gene-gene interaction was conducted to investigate the relationships between SNPs and TB. Significant SNPs were further interrogated in relation to TB clinical features and host inflammatory status.
Genotype frequencies of rs4736958 and rs7832767 within SFRP1 gene were significantly different (p=0.011, p=0.008, respectively) between tuberculosis group and control group. Subjects carrying C allele for rs4736958 showed a decreased tuberculosis risk (OR=0.66, 95% CI=0.51-0.87, p=0.003), whereas individuals carrying rs7832767 T allele had a significant increased risk in tuberculosis susceptibility (OR=1.32, 95% CI=1.01-1.74, p=0.046). Genetic model analysis revealed that dominant, co-dominant and recessive models of rs4736958 were associated with decreased susceptibility to tuberculosis (p all <0.05), while the recessive and co-dominant models of rs7832767 were related to significantly increased risk for tuberculosis (p all <0.05). There was a reduced tuberculosis risk in association with the haplotype CC (representing rs3242 and rs4736958) of SFRP1 (OR=0.73, 95% CI=0.56-0.96, p=0.026). Further stratification analysis indicated that TB patients with genotype CT for rs4736958 were associated with higher CRP concentrations, and heterozygous patients (CT genotype) of rs7832767 trended towards greater ESR levels.
SNPs rs4736958 and rs7832767 of SFRP1 gene were significantly associated with tuberculosis susceptibility and might influence the expression levels of inflammatory markers of tuberculosis patients in a Chinese Han population.
分泌型卷曲相关蛋白1(SFRP1)是一种公认的Wnt信号通路抑制调节因子,其多态性已被证明与炎症、感染以及癌症风险相关。我们验证了一个假设,即SFRP1基因内的单核苷酸多态性(SNP)与中国汉族人群结核病的易感性和临床特征相关。
采用MassARRAY方法对6个候选SNP进行基因分型,采用病例对照设计(260例结核病患者和252例健康对照)。对单个位点进行综合分析,包括基因型、等位基因频率和遗传模型、单倍型构建以及基因-基因相互作用,以研究SNP与结核病之间的关系。对显著的SNP进一步研究其与结核病临床特征和宿主炎症状态的关系。
SFRP1基因内rs4736958和rs7832767的基因型频率在结核病组和对照组之间有显著差异(分别为p = 0.011,p = 0.008)。携带rs4736958 C等位基因的受试者患结核病的风险降低(OR = 0.66,95% CI = 0.51 - 0.87,p = 0.003),而携带rs7832767 T等位基因的个体患结核病的易感性显著增加(OR = 1.32,95% CI = 1.01 - 1.74,p = 0.046)。遗传模型分析显示,rs4736958的显性、共显性和隐性模型与结核病易感性降低相关(p均<0.05),而rs7832767的隐性和共显性模型与结核病风险显著增加相关(p均<0.05)。与SFRP1的单倍型CC(代表rs3242和rs4736958)相关的结核病风险降低(OR = 0.73,95% CI = 0.56 - 0.96,p = 0.026)。进一步的分层分析表明,rs4736958基因型为CT的结核病患者与较高的CRP浓度相关,rs7832767的杂合子患者(CT基因型)ESR水平有升高趋势。
SFRP1基因的SNP rs4736958和rs7832767与结核病易感性显著相关,可能影响中国汉族人群结核病患者炎症标志物的表达水平。