Wang Ming-Shan, Adeola Adeniyi C, Li Yan, Zhang Ya-Ping, Wu Dong-Dong
State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China; University of Chinese Academy of Sciences, Beijing 100049, China.
State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.
Dongwuxue Yanjiu. 2015 Nov 18;36(6):320-7. doi: 10.13918/j.issn.2095-8137.2015.6.320.
Comparative genomics is a powerful approach that comprehensively interprets the genome. Herein, we performed whole genome comparative analysis of 16 Diptera genomes, including four mosquitoes and 12 Drosophilae. We found more than 540 000 constraint elements (CEs) in the Diptera genome, with the majority found in the intergenic, coding and intronic regions. Accelerated elements (AEs) identified in mosquitoes were mostly in the protein-coding regions (>93%), which differs from vertebrates in genomic distribution. Some genes functionally enriched in blood digestion, body temperature regulation and insecticide resistance showed rapid evolution not only in the lineage of the recent common ancestor of mosquitoes (RCAM), but also in some mosquito lineages. This may be associated with lineage-specific traits and/or adaptations in comparison with other insects. Our findings revealed that although universally fast evolution acted on biological systems in RCAM, such as hematophagy, same adaptations also appear to have occurred through distinct degrees of evolution in different mosquito species, enabling them to be successful blood feeders in different environments.
比较基因组学是一种全面解读基因组的强大方法。在此,我们对16种双翅目基因组进行了全基因组比较分析,其中包括4种蚊子和12种果蝇。我们在双翅目基因组中发现了超过54万个保守元件(CEs),其中大部分存在于基因间区、编码区和内含子区域。在蚊子中鉴定出的加速元件(AEs)大多位于蛋白质编码区(>93%),这在基因组分布上与脊椎动物不同。一些在血液消化、体温调节和抗杀虫剂方面功能富集的基因不仅在蚊子最近共同祖先(RCAM)的谱系中,而且在一些蚊子谱系中都显示出快速进化。与其他昆虫相比,这可能与谱系特异性特征和/或适应性有关。我们的研究结果表明,尽管普遍快速进化作用于RCAM中的生物系统,如吸血,但相同的适应性似乎也通过不同蚊子物种不同程度的进化而出现,使它们能够在不同环境中成功吸血。