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来自一些散发性阿尔茨海默病样本的不同X染色体单核苷酸变异

Distinct X-chromosome SNVs from some sporadic AD samples.

作者信息

Gómez-Ramos A, Podlesniy P, Soriano E, Avila J

机构信息

Centro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), ISCIII, Madrid 28031, Spain.

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Neurobiology Laboratory, Madrid 28049, Spain.

出版信息

Sci Rep. 2015 Dec 9;5:18012. doi: 10.1038/srep18012.

Abstract

Sporadic Alzheimer disease (SAD) is the most prevalent neurodegenerative disorder. With the development of new generation DNA sequencing technologies, additional genetic risk factors have been described. Here we used various methods to process DNA sequencing data in order to gain further insight into this important disease. We have sequenced the exomes of brain samples from SAD patients and non-demented controls. Using either method, we found a higher number of single nucleotide variants (SNVs), from SAD patients, in genes present at the X chromosome. Using the most stringent method, we validated these variants by Sanger sequencing. Two of these gene variants, were found in loci related to the ubiquitin pathway (UBE2NL and ATXN3L), previously do not described as genetic risk factors for SAD.

摘要

散发性阿尔茨海默病(SAD)是最常见的神经退行性疾病。随着新一代DNA测序技术的发展,更多的遗传风险因素被发现。在这里,我们使用了各种方法来处理DNA测序数据,以便更深入地了解这种重要疾病。我们对SAD患者和非痴呆对照的脑样本外显子组进行了测序。使用任何一种方法,我们在X染色体上的基因中发现SAD患者的单核苷酸变异(SNV)数量更多。使用最严格的方法,我们通过桑格测序验证了这些变异。其中两个基因变异位于与泛素途径相关的基因座(UBE2NL和ATXN3L)中,此前未被描述为SAD的遗传风险因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e108/4673451/13a0d0b2717b/srep18012-f1.jpg

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