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人类大脑单核苷酸多态性:DNA测序验证

Human Brain Single Nucleotide Polymorphism: Validation of DNA Sequencing.

作者信息

Picher Ángel J, Hernández Félix, Budeus Bettina, Soriano Eduardo, Avila Jesús

机构信息

Expedeon S.L.U., Parque Científico de Madrid, Cantoblanco, Madrid, Spain.

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.

出版信息

J Alzheimers Dis Rep. 2018 May 31;2(1):103-109. doi: 10.3233/ADR-170039.

DOI:10.3233/ADR-170039
PMID:30480253
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6159612/
Abstract

Genetic factors may be involved in the onset of neurodegenerative diseases like Alzheimer's disease. In the case of the familial type, the disease is due to an inherited mutation at specific sites in three genes. Also, there are some genetic risk factors that facilitate the development of sporadic Alzheimer's disease. All of these genetic analyses were performed using blood samples as a source of DNA. However, the presence of somatic mutations in the brain can be identified only using brain samples. In this review, we comment on a method that correctly identifies single nucleotide variations in the human brain and that can be used to validate high-through sequencing techniques. This method involves selective enrichment of the DNA population bearing the nucleotide variations, thereby facilitating posterior validation of the data by Sanger's sequencing.

摘要

遗传因素可能与阿尔茨海默病等神经退行性疾病的发病有关。在家族性类型中,该疾病是由三个基因特定位点的遗传突变引起的。此外,还有一些遗传风险因素会促进散发性阿尔茨海默病的发展。所有这些遗传分析都是使用血液样本作为DNA来源进行的。然而,只有使用脑样本才能识别大脑中的体细胞突变。在这篇综述中,我们评论了一种能够正确识别人类大脑中单个核苷酸变异并可用于验证高通量测序技术的方法。该方法涉及对携带核苷酸变异的DNA群体进行选择性富集,从而便于通过桑格测序对数据进行后续验证。

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1
Human Brain Single Nucleotide Polymorphism: Validation of DNA Sequencing.人类大脑单核苷酸多态性:DNA测序验证
J Alzheimers Dis Rep. 2018 May 31;2(1):103-109. doi: 10.3233/ADR-170039.
2
Validation of Suspected Somatic Single Nucleotide Variations in the Brain of Alzheimer's Disease Patients.阿尔茨海默病患者大脑中疑似体细胞单核苷酸变异的验证
J Alzheimers Dis. 2017;56(3):977-990. doi: 10.3233/JAD-161053.
3
Review: Somatic mutations in neurodegeneration.综述:神经退行性变中的体细胞突变。
Neuropathol Appl Neurobiol. 2018 Apr;44(3):267-285. doi: 10.1111/nan.12465. Epub 2018 Feb 28.
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Somatic signature of brain-specific single nucleotide variations in sporadic Alzheimer's disease.散发性阿尔茨海默病中脑特异性单核苷酸变异的体细胞特征。
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Somatic mutation that affects transcription factor binding upstream of CD55 in the temporal cortex of a late-onset Alzheimer disease patient.一位晚发性阿尔茨海默病患者颞叶皮质中影响 CD55 上游转录因子结合的体细胞突变。
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本文引用的文献

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Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.改进的DOP-PCR(iDOP-PCR):一种用于高效扩增低拷贝数基因组DNA的强大且简单的全基因组扩增方法。
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Validation of Suspected Somatic Single Nucleotide Variations in the Brain of Alzheimer's Disease Patients.阿尔茨海默病患者大脑中疑似体细胞单核苷酸变异的验证
J Alzheimers Dis. 2017;56(3):977-990. doi: 10.3233/JAD-161053.
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Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data.Illumina错误概况:解析宏基因组测序数据中的精细尺度变异
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