Šebesta Filip, Burda Jaroslav V
Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University , Ke Karlovu 3, 121 16 Prague 2, Czech Republic.
J Phys Chem B. 2017 May 4;121(17):4400-4413. doi: 10.1021/acs.jpcb.7b01427. Epub 2017 Apr 25.
Two possible pathways of the substitution reaction within the reduction process of the Pt(DACH)Cl by dGMP are compared: associative reaction course and autocatalytic Basolo-Pearson mechanisms. Since two forms: single-protonated and fully deprotonated phosphate group of dGMP are present in equilibrium at neutral and mildly acidic solutions, consideration of a side reactions scheme with acido-basic equilibrium-constraint is a very important model for obtaining reliable results. The examined complexes are optimized at the B3LYP-GD3BJ/6-31G(d) level with the COSMO implicit solvation model and Klamt's radii used for cavity construction. Energy characteristics and thermodynamics for all reaction branches are determined using the B3LYP-GD3BJ/6-311++G(2df,2pd)/IEF-PCM/scaled-UAKS level with Wertz's entropy corrections. Rate constants are estimated for each individual branch according to Eyring's transition state theory (TST), averaged according to equilibrium constraint and compared with available experimental data. The determined reaction barriers of the autocatalytic pathway fairly correspond with experimental values. Furthermore, autocatalytic reaction of tetraplatin and its two analogues complexes [Pt(en)Cl and Pt(NH)Cl] are explored and compared with measured data in order to examined general reaction descriptors.
比较了dGMP在Pt(DACH)Cl还原过程中取代反应的两种可能途径:缔合反应过程和自催化的巴索洛-皮尔逊机制。由于在中性和弱酸性溶液中,dGMP的磷酸基团存在单质子化和完全去质子化两种形式的平衡,考虑具有酸碱平衡约束的副反应方案是获得可靠结果的非常重要的模型。使用COSMO隐式溶剂化模型和用于构建空穴的克拉姆半径,在B3LYP-GD3BJ/6-31G(d)水平上对所研究的配合物进行了优化。使用具有韦茨熵校正的B3LYP-GD3BJ/6-311++G(2df,2pd)/IEF-PCM/缩放-UAKS水平确定所有反应分支的能量特征和热力学。根据艾林过渡态理论(TST)估计每个单独分支的速率常数,根据平衡约束进行平均,并与现有实验数据进行比较。所确定的自催化途径的反应势垒与实验值相当吻合。此外,还研究了四铂及其两种类似配合物[Pt(en)Cl和Pt(NH)Cl]的自催化反应,并与测量数据进行了比较,以检验一般反应描述符。