Bandyopadhyay Sushobhana, Sundaram Geetanjali
Department of Biochemistry and Centre for Research in Nanoscience and Nanotechnology, University of Calcutta, 35, Ballygunje Circular Road, Kolkata 700019, WB, India.
Genom Data. 2015 Sep 18;6:184-7. doi: 10.1016/j.gdata.2015.09.014. eCollection 2015 Dec.
The mechanism underlying stringently controlled sequence of events in the eukaryotic cell cycle involves periodic transcription of a number of genes encoding important regulators of cell cycle, growth, proliferation and apoptosis. Deregulated activities of transcription factors that contribute to this programmed gene expression, are associated with many diseases including cancer. A detailed mechanistic understanding of the transcriptional control associated with cell division is, therefore, important. We have reported earlier that the transcription factor Atf1 in Schizosaccharomyces pombe can regulate G2-M transition by directly controlling the expression of the mitotic cyclin Cdc13 (1).To gain a better understanding of the role of Atf1 in cell cycle, we performed a microarray based identification of cell cycle related targets of Atf1. The microarray data are available at NCBI's Gene Expression Omnibus (GEO) Series (accession number GSE71820). Here we report the annotation of the genes whose expression get altered by Atf1 overexpression and also provide details related to sample processing and statistical analysis of our microarray data.
真核细胞周期中严格控制的事件序列背后的机制涉及许多编码细胞周期、生长、增殖和凋亡重要调节因子的基因的周期性转录。导致这种程序性基因表达的转录因子活性失调与包括癌症在内的许多疾病相关。因此,详细了解与细胞分裂相关的转录调控机制很重要。我们之前报道过,粟酒裂殖酵母中的转录因子Atf1可通过直接控制有丝分裂周期蛋白Cdc13的表达来调节G2-M期转换(1)。为了更好地理解Atf1在细胞周期中的作用,我们基于微阵列对Atf1的细胞周期相关靶点进行了鉴定。微阵列数据可在NCBI的基因表达综合数据库(GEO)系列中获取(登录号GSE71820)。在此我们报告了因Atf1过表达而导致表达改变的基因的注释,并提供了与我们微阵列数据的样本处理和统计分析相关的详细信息。