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聚果榕(桑科)的完整叶绿体基因组

Complete chloroplast genome of Ficus racemosa (Moraceae).

作者信息

Mao Qi, Bi Guiqi

机构信息

a College of Agriculture, Guangdong Ocean University , Zhanjiang , China.

b College of Horticulture, Agricultural University of South China , Guangdong , China , and.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4655-4656. doi: 10.3109/19401736.2015.1106488. Epub 2015 Dec 28.

Abstract

Ficus racemosa, with immense medicinal value, and known as Cluster Fig Tree, Indian Fig Tree or Goolar (Gular) Figis, is a species of plant which belongs to family Moraceae. The complete chloroplast genome of Ficus racemosa was obtained by de novo assembly using next-generation sequencing data. The chloroplast genome of F. racemosa was 159 473 bp in length, which consisted of a large single region (88 110 bp), a small single copy region (20 007 bp) and a pair of invert repeat regions (25 678 bp). The overall GC content of this chloroplast genome was 36.0%. The chloroplast genome harbored 117 genes, including 84 protein-coding genes, 27 tRNA, and eight rRNA genes (4.5S rRNA, 5S rRNA, 16s rRNA and 23s rRNA) that were two copied. Phylogenetic analysis of the complete chloroplast genome sequences with the report-related chloroplast genomes revealed that Ficus racemosa is most closely related to Morus indica, a typical higher plant in fiamly Moraceae.

摘要

聚果榕具有巨大的药用价值,被称为簇叶无花果、印度无花果或古拉(古拉尔)无花果,是一种属于桑科的植物。利用下一代测序数据通过从头组装获得了聚果榕的完整叶绿体基因组。聚果榕的叶绿体基因组长度为159473碱基对,由一个大单拷贝区域(88110碱基对)、一个小单拷贝区域(20007碱基对)和一对反向重复区域(25678碱基对)组成。该叶绿体基因组的总体GC含量为36.0%。叶绿体基因组包含117个基因,包括84个蛋白质编码基因、27个tRNA和8个rRNA基因(4.5S rRNA、5S rRNA、16s rRNA和23s rRNA),这些基因有两个拷贝。对完整叶绿体基因组序列与报告相关的叶绿体基因组进行系统发育分析表明,聚果榕与桑科典型高等植物印度桑关系最为密切。

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