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垂花百合(百合科)的完整叶绿体基因组

The complete chloroplast genome of Lilium distichum Nakai (Liliaceae).

作者信息

Hwang Yoon-Jung, Lee Sang-Choon, Kim Kyunghee, Choi Beom-Soon, Park Jee Young, Yang Tae-Jin, Lim Ki-Byung

机构信息

a Department of Life Science , Sahmyook University , Seoul , Republic of Korea.

b Department of Plant Science , Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University , Seoul , Republic of Korea.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4633-4634. doi: 10.3109/19401736.2015.1101591. Epub 2016 Feb 9.

DOI:10.3109/19401736.2015.1101591
PMID:27159684
Abstract

Lilium distichum is a native lily species in Korea, northeastern China and far eastern Russia. The complete chloroplast genome sequence of L. distichum was generated by de novo assembly using whole genome next generation sequences. The chloroplast genome of L. distichum was 152 598 bp in length and divided into four distinct regions, such as large single copy region (82 031 bp), small single copy region (17 487 bp) and a pair of inverted repeat regions (26 540 bp). The genome annotation predicted a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes,and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that L. distichum is most closely related to L. superbum (Turk's-cap lily).

摘要

朝鲜百合是一种原产于韩国、中国东北和俄罗斯远东地区的百合品种。利用全基因组二代测序进行从头组装,获得了朝鲜百合完整的叶绿体基因组序列。朝鲜百合的叶绿体基因组长度为152598bp,分为四个不同的区域,即大单拷贝区(82031bp)、小单拷贝区(17487bp)和一对反向重复区(26540bp)。基因组注释共预测出112个基因,包括78个蛋白质编码基因、30个tRNA基因和4个rRNA基因。与已报道的叶绿体基因组进行系统发育分析表明,朝鲜百合与大花百合(头巾百合)关系最为密切。

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