Tanney Joey B, Douglas Brian, Seifert Keith A
Biodiversity (Mycology & Botany), Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada
Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, United Kingdom.
Mycologia. 2016 Mar-Apr;108(2):255-80. doi: 10.3852/15-136. Epub 2016 Jan 6.
Unidentified DNA sequences in isolation-based or culture-free studies of conifer endophytes are a persistent problem that requires a field approach to resolve. An investigation of foliar endophytes of Picea glauca, P. mariana, P. rubens and Pinus strobus in eastern Canada, using a combined field, morphological, cultural and DNA sequencing approach, resulted in the frequent isolation of Phialocephala spp. and the first verified discovery of their mollisia-like sexual states in the field. Phialocephala scopiformis and Ph. piceae were the most frequent species isolated as endophytes from healthy conifer needles. Corresponding Mollisia or mollisioid sexual states for Ph. scopiformis, Ph. piceae and several undescribed species in a clade containing Ph. dimorphospora were collected in the sampling area and characterized by analysis of the nuc internal transcribed spacer rDNA (ITS) and gene for the largest subunit of RNA polymerase II (RPB1) loci. Four novel species and one new combination in a clade containing Ph. dimorphospora, the type of Phialocephala, are presented, accompanied by descriptions of apothecia and previously undocumented synanamorphs. An epitype culture and corresponding reference sequences for Phialocephala dimorphospora are proposed. The resulting ITS barcodes linked with robust taxonomic species concepts are an important resource for future research on forest ecosystems and endophytes.
在针叶树内生菌的基于分离培养或免培养研究中,未鉴定的DNA序列一直是个问题,需要实地研究方法来解决。采用实地考察、形态学、培养和DNA测序相结合的方法,对加拿大东部白云杉、黑云杉、红皮云杉和北美乔松的叶内生菌进行调查,结果频繁分离出瓶梗孢属物种,并首次在野外证实发现其类似柔膜菌的有性态。瓶梗状瓶梗孢和云杉瓶梗孢是从健康针叶树针叶中最常分离出的内生菌物种。在采样区域收集了瓶梗状瓶梗孢、云杉瓶梗孢以及包含双态瓶梗孢的一个分支中几个未描述物种的相应柔膜菌或类柔膜菌有性态,并通过分析核糖体DNA内转录间隔区(ITS)和RNA聚合酶II最大亚基(RPB1)基因座进行了特征描述。本文提出了包含瓶梗孢属模式种双态瓶梗孢的一个分支中的四个新物种和一个新组合,并对子囊盘和以前未记录的合轴分生孢子进行了描述。还提出了双态瓶梗孢的一个后选模式培养物和相应的参考序列。由此产生的与可靠分类物种概念相关的ITS条形码是未来森林生态系统和内生菌研究的重要资源。