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利用RNA测序对瓜实蝇(Bactrocera cucurbitae)中化学感应相关蛋白进行鉴定及初步表征

Identification and preliminary characterization of chemosensory perception-associated proteins in the melon fly Bactrocera cucurbitae using RNA-seq.

作者信息

Elfekih Samia, Chen Chien-Yu, Hsu Ju-Chun, Belcaid Mahdi, Haymer David

机构信息

Commonwealth Science and Industry Organization (CSIRO), Biosecurity flagship, P.O. BOX 1700, Canberra, ACT 2601, Australia.

National Taiwan University, Department of Bio-industrial Mechatronics and Engineering, Taipei, Taiwan.

出版信息

Sci Rep. 2016 Jan 11;6:19112. doi: 10.1038/srep19112.

Abstract

An investigation into proteins involved in chemosensory perception in the melon fly, Bactrocera cucurbitae (Diptera: Tephritidae) is described here using a newly generated transcriptome dataset. The melon fly is a major agricultural pest, widely distributed in the Asia-Pacific region and some parts of Africa. For this study, a transcriptome dataset was generated using RNA extracted from 4-day-old adult specimens of the melon fly. The dataset was assembled and annotated via Gene Ontology (GO) analysis. Based on this and similarity searches to data from other species, a number of protein sequences putatively involved in chemosensory reception were identified and characterized in the melon fly. This included the highly conserved "Orco" along with a number of other less conserved odorant binding protein sequences. In addition, several sequences representing putative ionotropic and gustatory receptors were also identified. This study provides a foundation for future functional studies of chemosensory proteins in the melon fly and for making more detailed comparisons to other species. In the long term, this will ultimately help in the development of improved tools for pest management.

摘要

本文描述了一项利用新生成的转录组数据集对瓜实蝇(双翅目:实蝇科)化学感受相关蛋白质的研究。瓜实蝇是一种主要的农业害虫,广泛分布于亚太地区和非洲部分地区。在本研究中,使用从4日龄瓜实蝇成虫标本中提取的RNA生成了一个转录组数据集。该数据集通过基因本体(GO)分析进行组装和注释。基于此并与其他物种的数据进行相似性搜索,在瓜实蝇中鉴定并表征了一些可能参与化学感受的蛋白质序列。这包括高度保守的“Orco”以及一些其他保守性较低的气味结合蛋白序列。此外,还鉴定了几个代表假定离子型和味觉受体的序列。本研究为瓜实蝇化学感受蛋白的未来功能研究以及与其他物种进行更详细的比较奠定了基础。从长远来看,这最终将有助于开发改进的害虫管理工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9341/4707516/c45a88d13e59/srep19112-f1.jpg

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