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LEM结构域蛋白的纯化与结构分析

Purification and Structural Analysis of LEM-Domain Proteins.

作者信息

Herrada Isaline, Bourgeois Benjamin, Samson Camille, Buendia Brigitte, Worman Howard J, Zinn-Justin Sophie

机构信息

Institute for Integrative Biology of the Cell, CEA, CNRS, Université Paris-Sud, Gif-sur-Yvette, Paris, France.

Institut de Biologie Fonctionnelle et Adaptative, Université Paris Diderot, Paris, France.

出版信息

Methods Enzymol. 2016;569:43-61. doi: 10.1016/bs.mie.2015.07.008. Epub 2015 Aug 8.

Abstract

LAP2-emerin-MAN1 (LEM)-domain proteins are modular proteins characterized by the presence of a conserved motif of about 50 residues. Most LEM-domain proteins localize at the inner nuclear membrane, but some are also found in the endoplasmic reticulum or nuclear interior. Their architecture has been analyzed by predicting the limits of their globular domains, determining the 3D structure of these domains and in a few cases calculating the 3D structure of specific domains bound to biological targets. The LEM domain adopts an α-helical fold also found in SAP and HeH domains of prokaryotes and unicellular eukaryotes. The LEM domain binds to BAF (barrier-to-autointegration factor; BANF1), which interacts with DNA and tethers chromatin to the nuclear envelope. LAP2 isoforms also share an N-terminal LEM-like domain, which binds DNA. The structure and function of other globular domains that distinguish LEM-domain proteins from each other have been characterized, including the C-terminal dimerization domain of LAP2α and C-terminal WH and UHM domains of MAN1. LEM-domain proteins also have large intrinsically disordered regions that are involved in intra- and intermolecular interactions and are highly regulated by posttranslational modifications in vivo.

摘要

LAP2-emerin-MAN1(LEM)结构域蛋白是模块化蛋白,其特征在于存在约50个残基的保守基序。大多数LEM结构域蛋白定位于内核膜,但也有一些在内质网或核内部被发现。通过预测其球状结构域的边界、确定这些结构域的三维结构以及在少数情况下计算与生物靶点结合的特定结构域的三维结构,对它们的结构进行了分析。LEM结构域采用了一种α螺旋折叠,这种折叠也存在于原核生物和单细胞真核生物的SAP和HeH结构域中。LEM结构域与BAF(屏障自整合因子;BANF1)结合,BAF与DNA相互作用并将染色质连接到核膜。LAP2同工型也共享一个与DNA结合的N端LEM样结构域。区分LEM结构域蛋白的其他球状结构域的结构和功能已得到表征,包括LAP2α的C端二聚化结构域以及MAN1的C端WH和UHM结构域。LEM结构域蛋白还具有大的内在无序区域,这些区域参与分子内和分子间相互作用,并在体内受到翻译后修饰的高度调控。

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