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核纤层相分离调控植物中应激诱导的转录反应。

Nuclear lamina phase separation orchestrates stress-induced transcriptional responses in plants.

作者信息

Tang Yu, Liu Xiao, Fang Yiling, Calvanese Enrico, Hong Yeram, Gu Yangnan

机构信息

Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA; State Key Laboratory of Wheat Improvement, Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Shandong 261325, China.

State Key Laboratory of Wheat Improvement, Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Shandong 261325, China.

出版信息

Dev Cell. 2025 Aug 1. doi: 10.1016/j.devcel.2025.07.008.

DOI:10.1016/j.devcel.2025.07.008
PMID:40780209
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12338065/
Abstract

The nuclear lamina (NL), a perinuclear protein meshwork formed by nucleoskeleton and inner nuclear membrane (INM) proteins, is crucial for chromatin organization at the nuclear periphery and gene expression regulation in eukaryotic cells. However, NL-dependent transcriptional regulation remains poorly understood in plants due to the absence of most canonical NL proteins found in animals. Here, we report that the plant INM protein PLANT NUCLEAR ENVELOPE TRANSMEMBRANE 2 (PNET2) interacts with membrane-bound NAC (NAM, ATAF1/2, and CUC2) transcription factors, NTLs, via intrinsic disorder regions and promotes liquid-liquid phase separation within the NL. This compartmentalization effectively sequesters NTLs and restricts their transcriptional activity. In the absence of PNET2, NTLs become deregulated, triggering spontaneous and broad-spectrum stress responses. Importantly, we found that stress stimuli, such as heat shock, disrupt PNET2-NTL phase separation, releasing NTLs for target gene binding and transcriptional activation. These findings demonstrate a phase separation-based regulatory mechanism within the NL that controls membrane-bound transcription factor activity in response to environmental cues.

摘要

核纤层(NL)是一种由核骨架和内核膜(INM)蛋白形成的核周蛋白网络,对真核细胞中核周边的染色质组织和基因表达调控至关重要。然而,由于植物中缺乏动物中发现的大多数典型核纤层蛋白,因此在植物中对依赖核纤层的转录调控仍知之甚少。在这里,我们报道植物内核膜蛋白植物核膜跨膜蛋白2(PNET2)通过内在无序区域与膜结合的NAC(NAM、ATAF1/2和CUC2)转录因子NTLs相互作用,并促进核纤层内的液-液相分离。这种区室化有效地隔离了NTLs并限制了它们的转录活性。在没有PNET2的情况下,NTLs变得失调,引发自发的广谱应激反应。重要的是,我们发现热休克等应激刺激会破坏PNET2-NTL相分离,释放NTLs用于靶基因结合和转录激活。这些发现证明了核纤层内基于相分离的调控机制,该机制可响应环境信号控制膜结合转录因子的活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/29b93dfbfa5c/nihms-2097102-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/58af024d17ba/nihms-2097102-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/20d312ebced3/nihms-2097102-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/2c4aee9ba495/nihms-2097102-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/29b93dfbfa5c/nihms-2097102-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/58af024d17ba/nihms-2097102-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/20d312ebced3/nihms-2097102-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/2c4aee9ba495/nihms-2097102-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b1/12338065/29b93dfbfa5c/nihms-2097102-f0004.jpg

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本文引用的文献

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Interplay between membranes and biomolecular condensates in the regulation of membrane-associated cellular processes.膜与生物分子凝聚物在膜相关细胞过程调控中的相互作用。
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AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.2024 年的 AlphaFold 蛋白质结构数据库:为超过 2.14 亿个蛋白质序列提供结构覆盖。
Nucleic Acids Res. 2024 Jan 5;52(D1):D368-D375. doi: 10.1093/nar/gkad1011.
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Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores.进化上保守的蛋白质基序驱动植物核骨架与核孔之间的相互作用。
Plant Cell. 2023 Nov 30;35(12):4284-4303. doi: 10.1093/plcell/koad236.
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The plant nuclear lamina disassembles to regulate genome folding in stress conditions.植物核纤层在应激条件下解体以调节基因组折叠。
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Arabidopsis lamin-like proteins CRWN1 and CRWN2 interact with SUPPRESSOR OF NPR1-1 INDUCIBLE 1 and RAD51D to prevent DNA damage.拟南芥层粘连蛋白样蛋白 CRWN1 和 CRWN2 与 NPR1-1 诱导 1 和 RAD51D 相互作用,以防止 DNA 损伤。
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